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API: fix corner case of lib.infer_dtype #23422

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Nov 4, 2018
Merged

API: fix corner case of lib.infer_dtype #23422

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8e1e97e
API: fix corner case of lib.infer_dtype
h-vetinari Oct 30, 2018
3f988e8
Do not prioritize 'empty' over dtype
h-vetinari Oct 30, 2018
08d67e8
Update whatsnew
h-vetinari Oct 30, 2018
bcc481b
Retrigger CI due to hypothesis timeout
h-vetinari Oct 30, 2018
c0ded96
Review (jreback)
h-vetinari Oct 31, 2018
7e5d453
Review (jreback)
h-vetinari Nov 1, 2018
8ace6c7
Merge remote-tracking branch 'upstream/master' into infer_empty
h-vetinari Nov 2, 2018
3ce5776
Merge remote-tracking branch 'upstream/master' into infer_empty
h-vetinari Nov 3, 2018
a533ed8
Fix rebase oversight
h-vetinari Nov 3, 2018
19cf2dd
Retrigger CircleCI
h-vetinari Nov 3, 2018
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5 changes: 4 additions & 1 deletion pandas/_libs/lib.pyx
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Expand Up @@ -57,7 +57,7 @@ from tslibs.conversion cimport convert_to_tsobject
from tslibs.timedeltas cimport convert_to_timedelta64
from tslibs.timezones cimport get_timezone, tz_compare

from missing cimport (checknull,
from missing cimport (checknull, isnaobj,
is_null_datetime64, is_null_timedelta64, is_null_period)


Expand Down Expand Up @@ -1181,6 +1181,9 @@ def infer_dtype(value: object, skipna: bool=False) -> str:
values = construct_1d_object_array_from_listlike(value)

values = getattr(values, 'values', values)
if skipna:
values = values[~isnaobj(values)]
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this is a python and not a cimport, why are you not using checknull?

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checknull only returns a single bint, and not an array. I would have liked to cimport isnaobj, but that didn't work.

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so this isn array, ok, then add isnaobj to missing.pxd and make it a cpdef. then you can cimport it. (and you need to type return value)


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I wonder if we can incorporate this skipna logic into the for-loop below. Perhaps have an indicator to tell us whether we have seen an element in the values array that is non-null (when skipna is True).

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Unfortunately, that's not directly possible (nor performant), because the line directly below (with _try_infer_map) will return prematurely as soon as it can grab hold of a dtype.

val = _try_infer_map(values)
if val is not None:
return val
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3 changes: 3 additions & 0 deletions pandas/_libs/missing.pxd
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@@ -1,7 +1,10 @@
# -*- coding: utf-8 -*-

from numpy cimport ndarray, uint8_t

cpdef bint checknull(object val)
cpdef bint checknull_old(object val)
cpdef ndarray[uint8_t] isnaobj(ndarray arr)

cdef bint is_null_datetime64(v)
cdef bint is_null_timedelta64(v)
Expand Down
2 changes: 1 addition & 1 deletion pandas/_libs/missing.pyx
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Expand Up @@ -124,7 +124,7 @@ cdef inline bint _check_none_nan_inf_neginf(object val):

@cython.wraparound(False)
@cython.boundscheck(False)
def isnaobj(ndarray arr):
cpdef ndarray[uint8_t] isnaobj(ndarray arr):
"""
Return boolean mask denoting which elements of a 1-D array are na-like,
according to the criteria defined in `_check_all_nulls`:
Expand Down
16 changes: 16 additions & 0 deletions pandas/tests/dtypes/test_inference.py
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Expand Up @@ -591,6 +591,22 @@ def test_unicode(self):
expected = 'unicode' if PY2 else 'string'
assert result == expected

@pytest.mark.parametrize('dtype, missing, skipna, expected', [
(float, np.nan, False, 'floating'),
(float, np.nan, True, 'floating'),
(object, np.nan, False, 'floating'),
(object, np.nan, True, 'empty'),
(object, None, False, 'mixed'),
(object, None, True, 'empty')
])
@pytest.mark.parametrize('box', [pd.Series, np.array])
def test_object_empty(self, box, missing, dtype, skipna, expected):
# GH 23421
arr = box([missing, missing], dtype=dtype)

result = lib.infer_dtype(arr, skipna=skipna)
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assert result == expected

def test_datetime(self):

dates = [datetime(2012, 1, x) for x in range(1, 20)]
Expand Down