refactor: Use the new runBlocking function

Use the new `runBlocking` function that preserves Log4j's MDC context in
all library code. Code that was easy to migrate to structured
concurrency was already refactored in the previous commits. This commit
addresses the remaining `runBlocking` calls where it would be more
refactoring effort to migrate to suspending functions.

Signed-off-by: Martin Nonnenmacher <martin.nonnenmacher@bosch.com>

analyzer/src/main/kotlin/Analyzer.kt

@@ -29,7 +29,6 @@ import kotlinx.coroutines.flow.StateFlow
 import kotlinx.coroutines.flow.asStateFlow
 import kotlinx.coroutines.flow.first
 import kotlinx.coroutines.launch
-import kotlinx.coroutines.runBlocking
 import kotlinx.coroutines.sync.Mutex
 import kotlinx.coroutines.sync.withLock
 import kotlinx.coroutines.withContext
@@ -52,6 +51,7 @@ import org.ossreviewtoolkit.model.utils.setPackageCurations
 import org.ossreviewtoolkit.utils.common.CommandLineTool
 import org.ossreviewtoolkit.utils.common.VCS_DIRECTORIES
 import org.ossreviewtoolkit.utils.ort.Environment
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 /**
  * The class to run the analysis. The signatures of public functions in this class define the library API.

plugins/package-configuration-providers/dos/src/main/kotlin/DosPackageConfigurationProvider.kt

@@ -21,8 +21,6 @@ package org.ossreviewtoolkit.plugins.packageconfigurationproviders.dos
 
 import java.time.Duration
 
-import kotlinx.coroutines.runBlocking
-
 import org.apache.logging.log4j.kotlin.logger
 
 import org.ossreviewtoolkit.clients.dos.DosClient
@@ -43,6 +41,7 @@ import org.ossreviewtoolkit.model.utils.toPurl
 import org.ossreviewtoolkit.model.utils.toPurlExtras
 import org.ossreviewtoolkit.plugins.packageconfigurationproviders.api.PackageConfigurationProviderFactory
 import org.ossreviewtoolkit.utils.common.Options
+import org.ossreviewtoolkit.utils.ort.runBlocking
 import org.ossreviewtoolkit.utils.spdx.SpdxExpression
 
 data class DosPackageConfigurationProviderConfig(

plugins/package-managers/bazel/src/main/kotlin/Bazel.kt

@@ -22,8 +22,6 @@ package org.ossreviewtoolkit.plugins.packagemanagers.bazel
 import java.io.File
 import java.util.Base64
 
-import kotlinx.coroutines.runBlocking
-
 import org.apache.logging.log4j.kotlin.logger
 
 import org.ossreviewtoolkit.analyzer.AbstractPackageManagerFactory
@@ -58,6 +56,7 @@ import org.ossreviewtoolkit.utils.common.collectMessages
 import org.ossreviewtoolkit.utils.common.encodeHex
 import org.ossreviewtoolkit.utils.common.withoutPrefix
 import org.ossreviewtoolkit.utils.ort.createOrtTempFile
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 import org.semver4j.RangesList
 import org.semver4j.RangesListFactory

plugins/package-managers/node/src/main/kotlin/Npm.kt

@@ -31,7 +31,6 @@ import kotlinx.coroutines.Deferred
 import kotlinx.coroutines.Dispatchers
 import kotlinx.coroutines.async
 import kotlinx.coroutines.awaitAll
-import kotlinx.coroutines.runBlocking
 import kotlinx.coroutines.withContext
 
 import org.apache.logging.log4j.kotlin.logger
@@ -80,6 +79,7 @@ import org.ossreviewtoolkit.utils.common.realFile
 import org.ossreviewtoolkit.utils.common.stashDirectories
 import org.ossreviewtoolkit.utils.common.textValueOrEmpty
 import org.ossreviewtoolkit.utils.common.withoutPrefix
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 import org.semver4j.RangesList
 import org.semver4j.RangesListFactory

plugins/package-managers/node/src/main/kotlin/Yarn2.kt

@@ -31,7 +31,6 @@ import java.io.File
 import kotlinx.coroutines.Dispatchers
 import kotlinx.coroutines.async
 import kotlinx.coroutines.awaitAll
-import kotlinx.coroutines.runBlocking
 
 import org.apache.logging.log4j.kotlin.logger
 
@@ -70,6 +69,7 @@ import org.ossreviewtoolkit.utils.common.CommandLineTool
 import org.ossreviewtoolkit.utils.common.Os
 import org.ossreviewtoolkit.utils.common.ProcessCapture
 import org.ossreviewtoolkit.utils.common.textValueOrEmpty
+import org.ossreviewtoolkit.utils.ort.runBlocking
 import org.ossreviewtoolkit.utils.ort.showStackTrace
 
 import org.semver4j.RangesList

plugins/package-managers/node/src/main/kotlin/utils/NpmDependencyHandler.kt

@@ -21,14 +21,13 @@ package org.ossreviewtoolkit.plugins.packagemanagers.node.utils
 
 import java.io.File
 
-import kotlinx.coroutines.runBlocking
-
 import org.ossreviewtoolkit.model.Identifier
 import org.ossreviewtoolkit.model.Issue
 import org.ossreviewtoolkit.model.Package
 import org.ossreviewtoolkit.model.PackageLinkage
 import org.ossreviewtoolkit.model.utils.DependencyHandler
 import org.ossreviewtoolkit.plugins.packagemanagers.node.Npm
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 /**
  * A data class storing information about a specific NPM module and its dependencies.

plugins/reporters/fossid/src/main/kotlin/FossIdReporter.kt

@@ -24,7 +24,6 @@ import java.io.File
 import kotlinx.coroutines.Dispatchers
 import kotlinx.coroutines.async
 import kotlinx.coroutines.awaitAll
-import kotlinx.coroutines.runBlocking
 
 import org.apache.logging.log4j.kotlin.logger
 
@@ -37,6 +36,7 @@ import org.ossreviewtoolkit.model.config.PluginConfiguration
 import org.ossreviewtoolkit.reporter.Reporter
 import org.ossreviewtoolkit.reporter.ReporterInput
 import org.ossreviewtoolkit.utils.common.collectMessages
+import org.ossreviewtoolkit.utils.ort.runBlocking
 import org.ossreviewtoolkit.utils.ort.showStackTrace
 
 class FossIdReporter : Reporter {

plugins/scanners/dos/src/main/kotlin/DosScanner.kt

@@ -27,7 +27,6 @@ import kotlin.time.Duration.Companion.seconds
 import kotlin.time.toKotlinDuration
 
 import kotlinx.coroutines.delay
-import kotlinx.coroutines.runBlocking
 
 import org.apache.logging.log4j.kotlin.logger
 
@@ -60,6 +59,7 @@ import org.ossreviewtoolkit.utils.common.collectMessages
 import org.ossreviewtoolkit.utils.common.packZip
 import org.ossreviewtoolkit.utils.common.safeDeleteRecursively
 import org.ossreviewtoolkit.utils.ort.createOrtTempDir
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 /**
  * The DOS scanner wrapper is a client for the scanner API implemented as part of the Double Open Server project at

scanner/src/main/kotlin/provenance/ProvenanceDownloader.kt

@@ -25,8 +25,6 @@ import java.nio.file.StandardCopyOption
 import kotlin.io.path.copyToRecursively
 import kotlin.io.path.moveTo
 
-import kotlinx.coroutines.runBlocking
-
 import org.ossreviewtoolkit.downloader.DownloadException
 import org.ossreviewtoolkit.downloader.Downloader
 import org.ossreviewtoolkit.downloader.WorkingTreeCache
@@ -37,6 +35,7 @@ import org.ossreviewtoolkit.model.RepositoryProvenance
 import org.ossreviewtoolkit.model.config.DownloaderConfiguration
 import org.ossreviewtoolkit.utils.common.safeDeleteRecursively
 import org.ossreviewtoolkit.utils.ort.createOrtTempDir
+import org.ossreviewtoolkit.utils.ort.runBlocking
 
 /**
  * An interface that provides functionality to download source code.

scanner/src/main/kotlin/storages/ClearlyDefinedStorage.kt

@@ -24,7 +24,6 @@ import com.fasterxml.jackson.databind.JsonNode
 import java.time.Instant
 
 import kotlinx.coroutines.Dispatchers
-import kotlinx.coroutines.runBlocking
 
 import okhttp3.OkHttpClient
 
@@ -58,6 +57,7 @@ import org.ossreviewtoolkit.utils.common.AlphaNumericComparator
 import org.ossreviewtoolkit.utils.common.collectMessages
 import org.ossreviewtoolkit.utils.common.withoutPrefix
 import org.ossreviewtoolkit.utils.ort.OkHttpClientHelper
+import org.ossreviewtoolkit.utils.ort.runBlocking
 import org.ossreviewtoolkit.utils.ort.showStackTrace
 
 import retrofit2.HttpException

utils/scripting/src/main/kotlin/ScriptRunner.kt

@@ -29,10 +29,10 @@ import kotlin.script.experimental.host.toScriptSource
 import kotlin.script.experimental.jvmhost.BasicJvmScriptingHost
 import kotlin.time.measureTimedValue
 
-import kotlinx.coroutines.runBlocking
-
 import org.apache.logging.log4j.kotlin.logger
 
+import org.ossreviewtoolkit.utils.ort.runBlocking
+
 /**
  * A class providing the framework to run Kotlin scripts.
  */