Repositories list

• cromwell

  Public
  Workflow Execution Engine using WDL

  Scala

  •

  BSD 3-Clause "New" or "Revised" License

  •358•0•0•1•Updated Aug 21, 2024Aug 21, 2024

• DPGT

  Public
  DPGT is a distributed population genetics analysis tool which enabled joint calling on millions of WGS(whole genome sequencing) samples.

  Java

  •0•5•0•0•Updated Jul 29, 2024Jul 29, 2024

• SOAPnuke

  Public
  A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files

  C++

  •

  GNU General Public License v3.0

  •27•100•9•2•Updated Mar 28, 2024Mar 28, 2024

• SOAPMetaS

  Public
  Java

  •

  GNU General Public License v3.0

  •1•9•0•3•Updated Apr 21, 2023Apr 21, 2023

• SOAPTyping

  Public
  HLA typing for Sanger Based Test

  sbtsanger-sequencinghla+ 1hla-typing

  C++

  •

  GNU General Public License v3.0

  •7•16•4•0•Updated Apr 7, 2023Apr 7, 2023

• SOAPgaea

  Public
  sparkhadoopvariant-calling+ 2hadoop-mapreducebioinfo

  Java

  •

  GNU General Public License v3.0

  •9•4•4•3•Updated Dec 2, 2022Dec 2, 2022

• automation

  Public
  用于自动生成WDL

  Java

  •1•0•0•1•Updated May 20, 2022May 20, 2022

• bamqc

  Public
  BGI-lowpass bam quality control

  Java

  •0•2•0•0•Updated Aug 11, 2021Aug 11, 2021

• vcf-pl-merge

  Public
  lowpass 合并bcftools和gatk结果

  C

  •0•0•0•0•Updated Jan 4, 2021Jan 4, 2021

• vcfstats

  Public
  BGI-lowpass imputation vcf stats

  Java

  •1•1•0•0•Updated Dec 1, 2020Dec 1, 2020

• composer

  Public
  Visual and code editor for Common Workflow Language

  TypeScript

  •

  Apache License 2.0

  •72•1•5•0•Updated Oct 16, 2019Oct 16, 2019

• SOAPGaeaJointcalling

  Public
  0•0•0•0•Updated Aug 13, 2019Aug 13, 2019

• workflow-examples

  Public
  cromwell workflow examples

  WDL

  •0•1•0•0•Updated Nov 13, 2018Nov 13, 2018

• gaealib

  Public
  Java

  •1•0•0•0•Updated Nov 12, 2018Nov 12, 2018

• bwa-streaming

  Public
  support hadoop streaming

  C

  •

  GNU General Public License v3.0

  •1•2•1•0•Updated May 24, 2018May 24, 2018

• GaeaPipeline

  Public archive
  A pipeline for rapid genome analysis and interpretation

  Python

  •1•0•4•0•Updated May 27, 2017May 27, 2017

• PVFD

  Public archive
  Population variation frequency database.It's a sub-project of HVBase.

  CSS

  •0•0•0•0•Updated Feb 13, 2017Feb 13, 2017