Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Openneuropet main #314

Closed
wants to merge 3 commits into from
Closed

Openneuropet main #314

Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
63b5f4e
Change main header frame number from exception to warning, fixed imag…
noahg-neuroimage May 7, 2024
836613a
Merge branch 'openneuropet:main' into main
noahg-neuroimage Jun 3, 2024
a2392ed
Merge branch 'main' of https://github.com/openneuropet/PET2BIDS into …
noahg-neuroimage Jun 18, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions pypet2bids/pypet2bids/ecat2nii.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -151,16 +151,16 @@
sub_headers[0]["X_DIMENSION"],
sub_headers[0]["Y_DIMENSION"],
sub_headers[0]["Z_DIMENSION"],
main_header["NUM_FRAMES"],
len(sub_headers),
)

# make sure number of data elements matches frame number
single_frame = False
if img_shape[3] == 1 and img_shape[0:2] == shape_from_headers[0:2]:
single_frame = True
if img_shape != shape_from_headers and not single_frame:
raise Exception(
f"Mismatch between expected X,Y,Z, and Num. Frames dimensions ({shape_from_headers} obtained from headers"
raise Warning(
f"Mis-match between expected X,Y,Z, and Num. Frames dimensions ({shape_from_headers} obtained from headers"

Check failure on line 163 in pypet2bids/pypet2bids/ecat2nii.py

View workflow job for this annotation

GitHub Actions / Check for spelling errors 

Mis-match ==> Mismatch
f"and shape of imaging data ({img_shape}"
)

Expand Down
Loading