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requirements.txt
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requirements.txt
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anyio==3.7.1
appnope==0.1.3
argon2-cffi==21.3.0
argon2-cffi-bindings==21.2.0
arrow==1.2.3
asttokens==2.2.1
async-lru==2.0.4
attrs==23.1.0
Babel==2.12.1
backcall==0.2.0
bash_kernel==0.9.1
beautifulsoup4==4.12.2
biothings-client==0.3.0
bleach==6.0.0
cattrs==23.1.2
certifi==2023.7.22
cffi==1.15.1
charset-normalizer==3.2.0
click==8.1.6
coloredlogs==15.0.1
colorlog==6.7.0
comm==0.1.3
debugpy==1.6.7
decorator==5.1.1
defusedxml==0.7.1
exceptiongroup==1.1.2
executing==1.2.0
fastjsonschema==2.18.0
fqdn==1.5.1
humanfriendly==10.0
idna==3.4
ipykernel==6.25.0
ipython==8.14.0
ipython-genutils==0.2.0
ipywidgets==8.0.7
isoduration==20.11.0
jedi==0.19.0
Jinja2==3.1.2
joblib==1.3.1
json5==0.9.14
jsonpointer==2.4
jsonschema==4.18.4
jsonschema-specifications==2023.7.1
jupyter==1.0.0
jupyter-console==6.6.3
jupyter-events==0.6.3
jupyter-lsp==2.2.0
jupyter_client==8.3.0
jupyter_core==5.3.1
jupyter_server==2.7.0
jupyter_server_terminals==0.4.4
jupyterlab==4.0.3
jupyterlab-pygments==0.2.2
jupyterlab-widgets==3.0.8
jupyterlab_server==2.24.0
markdown-it-py==3.0.0
MarkupSafe==2.1.3
matplotlib-inline==0.1.6
mdurl==0.1.2
mistune==3.0.1
mygene==3.2.2
nbclient==0.8.0
nbconvert==7.7.3
nbformat==5.9.1
nest-asyncio==1.5.7
notebook==7.0.0
notebook_shim==0.2.3
numpy==1.25.1
overrides==7.3.1
packaging==23.1
pandas==2.0.3
pandocfilters==1.5.0
parso==0.8.3
pexpect==4.8.0
pickleshare==0.7.5
platformdirs==3.10.0
plotly==5.15.0
polars==0.18.8
prometheus-client==0.17.1
prompt-toolkit==3.0.39
psutil==5.9.5
ptyprocess==0.7.0
pure-eval==0.2.2
pyarrow==12.0.1
pycparser==2.21
Pygments==2.15.1
python-dateutil==2.8.2
python-json-logger==2.0.7
pytz==2023.3
PyYAML==6.0.1
pyzmq==25.1.0
qtconsole==5.4.3
QtPy==2.3.1
referencing==0.30.0
requests==2.31.0
requests-cache==1.1.0
rfc3339-validator==0.1.4
rfc3986-validator==0.1.1
rich==13.5.2
rpds-py==0.9.2
Send2Trash==1.8.2
six==1.16.0
sniffio==1.3.0
soupsieve==2.4.1
stack-data==0.6.2
tenacity==8.2.2
terminado==0.17.1
tinycss2==1.2.1
tomli==2.0.1
tornado==6.3.2
traitlets==5.9.0
typer==0.9.0
typing_extensions==4.7.1
tzdata==2023.3
uri-template==1.3.0
url-normalize==1.4.3
urllib3==2.0.4
verboselogs==1.7
wcwidth==0.2.6
webcolors==1.13
webencodings==0.5.1
websocket-client==1.6.1
wget==3.2
widgetsnbextension==4.0.8
nbclient
pyvis
pywikipathways
biopython
tqdm==4.66.2
# You must make sure that the commit hash is matched with your acutal used version
git+https://github.com/yjcyxky/ontology-matcher.git@fd4f606770e7768054960d7264f2d1444755c40b
git+https://github.com/yjcyxky/graph-builder.git@2dc68bce8f3f7498aeeb900c49929172d694e295