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@open-prophetdb

OpenProphetDB

OpenProphetDB is an open research group focused on unlocking the potential of existing drugs to save patients with rare and complex diseases.
README.md

Hi there 👋

Welcome to the OpenProphetDB! OpenProphetDB is an open research group focused on unlocking the potential of existing drugs to save patients with rare and complex diseases. We explore the following topics: constructing and integrating knowledge graph, multi-omics data, and deep learning models to understand the molecular mechanisms of human rare and complex diseases, or to predict new indications for known drugs through drug repurposing. Visit our official website for more information.

Useful Resources

Network Medicine Platform

Online Web System

If you are interested in using knowledge graph and deep learning models to understand the molecular mechanisms of human rare and complex diseases, or to predict new indications for known drugs through drug repurposing. please visit our Network Medicine Platform to get started or the biomedgps repository to install the platform locally.

Knowledge Graph & Deep Learning Models

If you are interested in constructing knowledge graph and deep learning models, please visit the biomedgps-data repository or the DocWebsite.

Semi-Auto Labeling Tool for Biomedical Publications

If you want to join us to construct knowledge graph, please visit our Labeling Tool to get started or the prophet-studio repository to install the tool locally.

Insilico Clinical Trials Platform

Validating Drug Effects Using EHR and/or Patient Survey Data. Comming Soon...

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  1. biomedgps biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    Rust 13 1

  2. biomedgps-data biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    Jupyter Notebook 4 1

  3. prophet-studio prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    Python 5

  4. dgl-ke dgl-ke Public

    Forked from awslabs/dgl-ke

    High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

    Python

  5. biominer-components biominer-components Public

    UI Components for BioMiner

    TypeScript 1

  6. prophetdb.org prophetdb.org Public

    A website for OpenProphetDB community.

    1

Repositories

Showing 10 of 14 repositories
  • graph-builder Public

    A Graph Builder for BioMedGPS Project

    open-prophetdb/graph-builder’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Jul 12, 2024
  • biomedgps Public

    A knowledge graph system with graph neural network for drug repurposing and disease mechanism.

    open-prophetdb/biomedgps’s past year of commit activity
    Rust 13 AGPL-3.0 1 3 0 Updated Jul 11, 2024
  • biomedgps-data Public

    Biomedical knowledge graph & graph neural network models for drug repurposing.

    open-prophetdb/biomedgps-data’s past year of commit activity
    Jupyter Notebook 4 1 8 0 Updated Jul 11, 2024
  • prophetdb.org Public

    A website for OpenProphetDB community.

    open-prophetdb/prophetdb.org’s past year of commit activity
    0 MIT 1 0 0 Updated Jul 2, 2024
  • .github Public
    open-prophetdb/.github’s past year of commit activity
    0 0 0 0 Updated Jun 27, 2024
  • biominer-components Public

    UI Components for BioMiner

    open-prophetdb/biominer-components’s past year of commit activity
    TypeScript 1 0 0 0 Updated May 28, 2024
  • biomedical-knowledgebases Public

    A collection of biomedical knowledgebases, ontologies, and datasets.

    open-prophetdb/biomedical-knowledgebases’s past year of commit activity
    1 0 0 0 Updated Apr 15, 2024
  • ontology-matcher Public

    It's a simple ontology matcher for building a set of cleaned ontologies. [For BioMedGPS project]

    open-prophetdb/ontology-matcher’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 29, 2024
  • dgl-ke Public Forked from awslabs/dgl-ke

    High performance, easy-to-use, and scalable package for learning large-scale knowledge graph embeddings.

    open-prophetdb/dgl-ke’s past year of commit activity
    Python 0 Apache-2.0 197 0 0 Updated Jan 28, 2024
  • prophet-studio Public

    A labeling tool for building your own domain knowledgebase from biomedical publications. Let us read the papers routinely and build our own domain knowledgebase together.

    open-prophetdb/prophet-studio’s past year of commit activity
    Python 5 0 4 0 Updated Dec 5, 2023
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