Update website to version 2.1.0

neperfepx · Oct 1, 2024 · b04b094 · b04b094
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diff --git a/conf.py b/conf.py
@@ -12,7 +12,7 @@
 import sphinx_rtd_theme
 
 project = u'FEPX'
-version = u'2.0.1'
+version = u'2.1.0'
 release = version
 author = u'ACME Lab, CNRS'
 copyright = u'ACME Lab, CNRS'

diff --git a/doc/tutorials/simple_simulation.rst b/doc/tutorials/simple_simulation.rst
@@ -105,59 +105,6 @@ In the simulation directory (:file:`simple_simulation`):
     Info   : Final step terminated. Simulation completed successfully.
     ========================================================================
 
-In the upper-level directory:
-
-  .. code-block:: console
-
-   $ fepx-pp simple_simulation
-
-    ==========================     F   E   P   X   ==========================
-    Info   : A finite element software package for  polycrystal plasticity.
-    Info   : Version 2.0.0
-    Info   : Running on 20 threads.
-    Info   : <https://fepx.info>
-    Info   : Copyright (C) 1996-2023, DPLab, ACME Lab, CNRS.
-    Info   : ---------------------------------------------------------------
-    Info   : MODULE  -S loaded with arguments:
-    Info   : [ini file] (none)
-    Info   : [com line] simple_simulation
-    Info   : ---------------------------------------------------------------
-    Info   : Reading input data...
-    Info   :   - Reading arguments...
-    Info   : Converting result directory into .sim directory...
-    Info   :   - Parsing results...
-    Info   :     > Input files: msh config
-    Info   :     > Node number      : 4008
-    Info   :     > Element number   : 2453
-    Info   :     > Elset number     : 20
-    Info   :     > Partition number : 4
-    Info   :     > Step number      : 1
-    Info   :     > Node results     : coo
-    Info   :     > Elt results      : ori strain stress
-    Info   :     [o] Writing directory `simple_simulation.sim'...
-    Info   :   - Writing inputs...
-    Info   :     [o] Writing directory `simple_simulation.sim/inputs'...
-    Info   :       . simulation.msh...
-    Info   :       . simulation.cfg...
-    Info   :       . *.sh...
-    cp: cannot stat 'simple_simulation/*.sh': No such file or directory
-    Info   :     [o] Wrote directory `simple_simulation.sim/inputs'.
-    Info   :   - Writing results...
-    Info   :     [o] Writing directory `simple_simulation.sim/results'...
-    Info   :     [o] Writing directory `simple_simulation.sim/results/nodes'...
-    Info   :       . coo .............................................. 100%
-    Info   :     [o] Wrote directory `simple_simulation.sim/results/nodes'.
-    Info   :     [o] Writing directory `simple_simulation.sim/results/elts'...
-    Info   :       . ori .............................................. 100%
-    Info   :       . strain ........................................... 100%
-    Info   :       . stress ........................................... 100%
-    Info   :     [o] Wrote directory `simple_simulation.sim/results/elts'.
-    Info   :     [o] Wrote directory `simple_simulation.sim'.
-    Info   : Elapsed time: 0.075 secs.
-    ========================================================================
-
-  .. note:: It is also possible to run :command:`fepx-pp .` from within the directory containing the input (and output) files, but the :ref:`simulation_directory` will still be generated in the upper-level directory.
-
 The content of the resulting :ref:`simulation_directory`, :file:`simple_simulation.sim`, is::
 
   simple_simulation.sim

diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 7b2386048c13339e6d13fda326f467b0
+config: 666786dfefa14eab89bbe26834c0f8a8
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_sources/doc/tutorials/simple_simulation.rst.txt b/docs/_sources/doc/tutorials/simple_simulation.rst.txt
@@ -105,59 +105,6 @@ In the simulation directory (:file:`simple_simulation`):
     Info   : Final step terminated. Simulation completed successfully.
     ========================================================================
 
-In the upper-level directory:
-
-  .. code-block:: console
-
-   $ fepx-pp simple_simulation
-
-    ==========================     F   E   P   X   ==========================
-    Info   : A finite element software package for  polycrystal plasticity.
-    Info   : Version 2.0.0
-    Info   : Running on 20 threads.
-    Info   : <https://fepx.info>
-    Info   : Copyright (C) 1996-2023, DPLab, ACME Lab, CNRS.
-    Info   : ---------------------------------------------------------------
-    Info   : MODULE  -S loaded with arguments:
-    Info   : [ini file] (none)
-    Info   : [com line] simple_simulation
-    Info   : ---------------------------------------------------------------
-    Info   : Reading input data...
-    Info   :   - Reading arguments...
-    Info   : Converting result directory into .sim directory...
-    Info   :   - Parsing results...
-    Info   :     > Input files: msh config
-    Info   :     > Node number      : 4008
-    Info   :     > Element number   : 2453
-    Info   :     > Elset number     : 20
-    Info   :     > Partition number : 4
-    Info   :     > Step number      : 1
-    Info   :     > Node results     : coo
-    Info   :     > Elt results      : ori strain stress
-    Info   :     [o] Writing directory `simple_simulation.sim'...
-    Info   :   - Writing inputs...
-    Info   :     [o] Writing directory `simple_simulation.sim/inputs'...
-    Info   :       . simulation.msh...
-    Info   :       . simulation.cfg...
-    Info   :       . *.sh...
-    cp: cannot stat 'simple_simulation/*.sh': No such file or directory
-    Info   :     [o] Wrote directory `simple_simulation.sim/inputs'.
-    Info   :   - Writing results...
-    Info   :     [o] Writing directory `simple_simulation.sim/results'...
-    Info   :     [o] Writing directory `simple_simulation.sim/results/nodes'...
-    Info   :       . coo .............................................. 100%
-    Info   :     [o] Wrote directory `simple_simulation.sim/results/nodes'.
-    Info   :     [o] Writing directory `simple_simulation.sim/results/elts'...
-    Info   :       . ori .............................................. 100%
-    Info   :       . strain ........................................... 100%
-    Info   :       . stress ........................................... 100%
-    Info   :     [o] Wrote directory `simple_simulation.sim/results/elts'.
-    Info   :     [o] Wrote directory `simple_simulation.sim'.
-    Info   : Elapsed time: 0.075 secs.
-    ========================================================================
-
-  .. note:: It is also possible to run :command:`fepx-pp .` from within the directory containing the input (and output) files, but the :ref:`simulation_directory` will still be generated in the upper-level directory.
-
 The content of the resulting :ref:`simulation_directory`, :file:`simple_simulation.sim`, is::
 
   simple_simulation.sim

diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '2.0.1',
+    VERSION: '2.1.0',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

diff --git a/docs/applications.html b/docs/applications.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Applications &mdash; FEPX 2.0.1 documentation</title>
+  <title>Applications &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="_static/documentation_options.js?v=20623aea"></script>
         <script src="_static/doctools.js?v=888ff710"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/community.html b/docs/community.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Community &mdash; FEPX 2.0.1 documentation</title>
+  <title>Community &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="_static/documentation_options.js?v=20623aea"></script>
         <script src="_static/doctools.js?v=888ff710"></script>
         <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/js/theme.js"></script>
@@ -29,7 +29,7 @@
             <a href="index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="search.html" method="get">

diff --git a/docs/doc/config.html b/docs/doc/config.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Configuration File (simulation.cfg) &mdash; FEPX 2.0.1 documentation</title>
+  <title>Configuration File (simulation.cfg) &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/copying.html b/docs/doc/copying.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Conditions of Use &mdash; FEPX 2.0.1 documentation</title>
+  <title>Conditions of Use &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/crystal.html b/docs/doc/crystal.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Crystal Structures &mdash; FEPX 2.0.1 documentation</title>
+  <title>Crystal Structures &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
@@ -31,7 +31,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/develhistory.html b/docs/doc/develhistory.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>Development History (1990-2020) &mdash; FEPX 2.0.1 documentation</title>
+  <title>Development History (1990-2020) &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/fdl.html b/docs/doc/fdl.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>GNU Free Documentation License &mdash; FEPX 2.0.1 documentation</title>
+  <title>GNU Free Documentation License &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/fileformat.html b/docs/doc/fileformat.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>File and Directory Formats &mdash; FEPX 2.0.1 documentation</title>
+  <title>File and Directory Formats &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
         <script async="async" src="https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"></script>
@@ -31,7 +31,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">

diff --git a/docs/doc/gpl.html b/docs/doc/gpl.html
@@ -4,15 +4,15 @@
   <meta charset="utf-8" /><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" />
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>GNU General Public License &mdash; FEPX 2.0.1 documentation</title>
+  <title>GNU General Public License &mdash; FEPX 2.1.0 documentation</title>
       <link rel="stylesheet" href="../_static/pygments.css" type="text/css" />
       <link rel="stylesheet" href="../_static/css/theme.css" type="text/css" />
       <link rel="stylesheet" href="../_static/my_theme.css" type="text/css" />
   <!--[if lt IE 9]>
     <script src="../_static/js/html5shiv.min.js"></script>
   <![endif]-->
 
-        <script src="../_static/documentation_options.js?v=f5cff4aa"></script>
+        <script src="../_static/documentation_options.js?v=20623aea"></script>
         <script src="../_static/doctools.js?v=888ff710"></script>
         <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/js/theme.js"></script>
@@ -30,7 +30,7 @@
             <a href="../index.html" class="icon icon-home"> FEPX
           </a>
               <div class="version">
-                2.0.1
+                2.1.0
               </div>
 <div role="search">
   <form id="rtd-search-form" class="wy-form" action="../search.html" method="get">