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L0 flush: opt-in mechanism to bypass PageCache reads and writes #8190

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merged 35 commits into from
Jul 2, 2024

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@problame problame commented Jun 27, 2024

part of #7418

Motivation

(reproducing #7418)

When we do an InMemoryLayer::write_to_disk, there is a tremendous amount of random read I/O, as deltas from the ephemeral file (written in LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can see that this delta layer writing phase is substantially more expensive than the initial ingest of data, and that within the delta layer write a significant amount of the CPU time is spent traversing the page cache.

High-Level Changes

Add a new mode for L0 flush that works as follows:

  • Read the full ephemeral file into memory -- layers are much smaller than total memory, so this is afforable
  • Do all the random reads directly from this in memory buffer instead of using blob IO/page cache/disk reads.
  • Add a semaphore to limit how many timelines may concurrently do this (limit peak memory).
  • Make the semaphore configurable via PS config.

Implementation Details

The new BlobReaderRef::Slice is a temporary hack until we can ditch blob_io for InMemoryLayer => Plan for this is laid out in #8183

Correctness

The correctness of this change is quite obvious to me: we do what we did before (blob_io) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the API a bit in preliminary PR #8186 to make it less error-prone, but still, careful review is requested.

Performance

I manually measured single-client ingest performance from pgbench -i ....

Full report: https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

  • no speed improvements during ingest, but
  • significantly lower pressure on PS PageCache (eviction rate drops to 1/3)
    • (that's why I'm working on this)
  • noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require opt-in.

We'll do more testing in staging & pre-prod.

Stability / Monitoring

memory consumption: there's no hard limit on max InMemoryLayer size (aka "checkpoint distance") , hence there's no hard limit on the memory allocation we do for flushing. In practice, we a) log a warning when we flush oversized layers, so we'd know which tenant is to blame and b) if we were to put a hard limit in place, we would have to decide what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer, dependent on checkpoint_distance. Then limit concurrency based on that.

metrics: we do have the flush_time_histo, but that includes the wait time for the semaphore. We could add a separate metric for the time spent after acquiring the semaphore, so one can infer the wait time. Seems unnecessary at this point, though.

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github-actions bot commented Jun 27, 2024

3000 tests run: 2885 passed, 0 failed, 115 skipped (full report)


Code coverage* (full report)

  • functions: 32.7% (6922 of 21173 functions)
  • lines: 50.0% (54264 of 108471 lines)

* collected from Rust tests only


The comment gets automatically updated with the latest test results
c5bc214 at 2024-07-02T11:42:57.331Z :recycle:

@problame
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the remote_storage changes will hopefully land before this PR in separate PR #8193

Base automatically changed from problame/virtualfile-use-boundedbuf to main June 28, 2024 09:20
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Did some manual perf testing. Updated PR description, report here: https://www.notion.so/neondatabase/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

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Stability / Monitoring

TODO

Existing page cache metrics are sufficient to quantify the impact on PageCache.

Do we want metrics on semaphore wait queue length or are higher-level metrics sufficient?

@jcsp
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jcsp commented Jul 1, 2024

Do we want metrics on semaphore wait queue length or are higher-level metrics sufficient?

If it's easy, then a queue depth stat is a nice thing to have in our back pocket. Not mandatory though.

@problame problame marked this pull request as ready for review July 2, 2024 10:54
@problame problame requested a review from a team as a code owner July 2, 2024 10:54
@problame problame requested a review from VladLazar July 2, 2024 10:54
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problame commented Jul 2, 2024

@jcsp I addressed your review comments, see latest pushes.

Also, given that I plumbed through the l0_flush::L0FlushGlobalState, maybe we want to move the GlobalResourceUnits there, so it no longer is a global lazy static? (Obviously in a follow-up PR)

// Per-timeline RAII struct for its contribution to [`GlobalResources`]
struct GlobalResourceUnits {
// How many dirty bytes have I added to the global dirty_bytes: this guard object is responsible
// for decrementing the global counter by this many bytes when dropped.
dirty_bytes: u64,
}

@problame problame merged commit 5de896e into main Jul 2, 2024
65 checks passed
@problame problame deleted the problame/fast-delta-layer-writes branch July 2, 2024 14:29
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
VladLazar pushed a commit that referenced this pull request Jul 8, 2024
part of #7418

# Motivation

(reproducing #7418)

When we do an `InMemoryLayer::write_to_disk`, there is a tremendous
amount of random read I/O, as deltas from the ephemeral file (written in
LSN order) are written out to the delta layer in key order.

In benchmarks (#7409) we can
see that this delta layer writing phase is substantially more expensive
than the initial ingest of data, and that within the delta layer write a
significant amount of the CPU time is spent traversing the page cache.

# High-Level Changes

Add a new mode for L0 flush that works as follows:

* Read the full ephemeral file into memory -- layers are much smaller
than total memory, so this is afforable
* Do all the random reads directly from this in memory buffer instead of
using blob IO/page cache/disk reads.
* Add a semaphore to limit how many timelines may concurrently do this
(limit peak memory).
* Make the semaphore configurable via PS config.

# Implementation Details

The new `BlobReaderRef::Slice` is a temporary hack until we can ditch
`blob_io` for `InMemoryLayer` => Plan for this is laid out in
#8183

# Correctness

The correctness of this change is quite obvious to me: we do what we did
before (`blob_io`) but read from memory instead of going to disk.

The highest bug potential is in doing owned-buffers IO. I refactored the
API a bit in preliminary PR
#8186 to make it less
error-prone, but still, careful review is requested.

# Performance

I manually measured single-client ingest performance from `pgbench -i
...`.

Full report:
https://neondatabase.notion.site/2024-06-28-benchmarking-l0-flush-performance-e98cff3807f94cb38f2054d8c818fe84?pvs=4

tl;dr:

* no speed improvements during ingest,  but
* significantly lower pressure on PS PageCache (eviction rate drops to
1/3)
  * (that's why I'm working on this)
* noticable but modestly lower CPU time

This is good enough for merging this PR because the changes require
opt-in.

We'll do more testing in staging & pre-prod.

# Stability / Monitoring

**memory consumption**: there's no _hard_ limit on max `InMemoryLayer`
size (aka "checkpoint distance") , hence there's no hard limit on the
memory allocation we do for flushing. In practice, we a) [log a
warning](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L5741-L5743)
when we flush oversized layers, so we'd know which tenant is to blame
and b) if we were to put a hard limit in place, we would have to decide
what to do if there is an InMemoryLayer that exceeds the limit.
It seems like a better option to guarantee a max size for frozen layer,
dependent on `checkpoint_distance`. Then limit concurrency based on
that.

**metrics**: we do have the
[flush_time_histo](https://github.com/neondatabase/neon/blob/23827c6b0d400cbb9a972d4d05d49834816c40d1/pageserver/src/tenant/timeline.rs#L3725-L3726),
but that includes the wait time for the semaphore. We could add a
separate metric for the time spent after acquiring the semaphore, so one
can infer the wait time. Seems unnecessary at this point, though.
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