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fixes for CRAN

fixes for CRAN #1054

Workflow file for this run

# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
on:
push:
branches:
- main
- master
pull_request:
branches:
- main
- master
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release'}
- {os: macOS-latest, r: 'release'}
- {os: ubuntu-22.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-22.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest"}
- {os: ubuntu-20.04, r: '3.6', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
env:
R_CHECK_FORCE_SUGGESTS: false
R_CHECK_CRAN_INCOMING_REMOTE: false
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@v2
- name: Install system dependencies (macOS only)
if: runner.os == 'macOS'
run: |
brew install pkg-config
brew install cairo
brew install --cask xquartz
- uses: r-lib/actions/setup-r-dependencies@v2
if: matrix.config.r == '3.6'
with:
extra-packages: any::rcmdcheck, soiltexture=?ignore-before-r=4.3.0, markovchain=?ignore-before-r=4.0.0, Hmisc=?ignore, knitr=?ignore-before-r=4.0.0, rmarkdown=?ignore-before-r=4.0.0, testthat=?ignore-before-r=4.0.0,
needs: check
- uses: r-lib/actions/setup-r-dependencies@v2
if: matrix.config.r != '3.6'
with:
extra-packages: any::rcmdcheck, markovchain=?ignore-before-r=4.0.0
needs: check
- name: Install soilDB from r-universe (R-devel only)
if: matrix.config.r == 'devel'
run: |
install.packages("soilDB", repos = 'https://ncss-tech.r-universe.dev')
shell: Rscript {0}
- uses: r-lib/actions/check-r-package@v2
with:
upload-snapshots: true