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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 365 215

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 135 65

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 30 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 59 30

Repositories

Showing 10 of 221 repositories
  • smile-dremio-gateway Public
    mskcc/smile-dremio-gateway’s past year of commit activity
    Go 0 AGPL-3.0 1 0 0 Updated Aug 19, 2024
  • ridgeback Public

    Toil API

    mskcc/ridgeback’s past year of commit activity
    Python 1 2 38 4 Updated Aug 19, 2024
  • vepcheck Public

    Nextflow pipeline to check different vep version

    mskcc/vepcheck’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Aug 16, 2024
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 5 97 (2 issues need help) 19 Updated Aug 16, 2024
  • smile-server Public
    mskcc/smile-server’s past year of commit activity
    Java 2 4 78 2 Updated Aug 15, 2024
  • igo-demux Public

    Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

    mskcc/igo-demux’s past year of commit activity
    Python 6 Apache-2.0 0 4 0 Updated Aug 14, 2024
  • toil-elk Public

    Template for running Toil on LSF HPC with ELK stack logging

    mskcc/toil-elk’s past year of commit activity
    Makefile 0 0 0 0 Updated Aug 14, 2024
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 0 7 Updated Aug 14, 2024
  • process_fastq Public

    This package will help process, merge and link fastq in user specified directory from manifest file

    mskcc/process_fastq’s past year of commit activity
    Python 0 0 0 16 Updated Aug 14, 2024
  • smile-label-generator Public

    SMILE messaging service for handling CMO label generation

    mskcc/smile-label-generator’s past year of commit activity
    Java 0 AGPL-3.0 3 0 0 Updated Aug 13, 2024
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