GitHub - mruffalo/bwt-sw: BWT-SW - A Practical Local Alignment Tool that Finds All Alignments

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BWT-SW - A Practical Local Alignment Tool that Finds All Alignments

i.cs.hku.hk/~ckwong3/bwtsw/

GPL-2.0 license

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
BWT.c		BWT.c
BWT.h		BWT.h
BWTBlast.c		BWTBlast.c
BWTConstruct.c		BWTConstruct.c
BWTConstruct.h		BWTConstruct.h
BWTFormatdb.c		BWTFormatdb.c
BWTFormatdb.h		BWTFormatdb.h
BWTSW.c		BWTSW.c
BlastCompare.c		BlastCompare.c
COPYING		COPYING
DNACount.c		DNACount.c
DNACount.h		DNACount.h
HSP.c		HSP.c
HSP.h		HSP.h
HSPstatistic.c		HSPstatistic.c
HSPstatistic.h		HSPstatistic.h
Makefile		Makefile
MemManager.c		MemManager.c
MemManager.h		MemManager.h
MiscUtilities.c		MiscUtilities.c
MiscUtilities.h		MiscUtilities.h
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README		README
Socket.c		Socket.c
Socket.h		Socket.h
TextConverter.c		TextConverter.c
TextConverter.h		TextConverter.h
Timing.c		Timing.c
Timing.h		Timing.h
TypeNLimit.h		TypeNLimit.h
autosearch.pl		autosearch.pl
blast_dust.c		blast_dust.c
blast_dust.h		blast_dust.h
bwtblast.ini		bwtblast.ini
bwtformatdb.ini		bwtformatdb.ini
bwtformatdb_minimal.ini		bwtformatdb_minimal.ini
bwtsw.ini		bwtsw.ini
bwtsw.parm		bwtsw.parm
bwtsw_maximal.ini		bwtsw_maximal.ini
bwtsw_minimal.ini		bwtsw_minimal.ini
compare.pl		compare.pl
dictionary.c		dictionary.c
dictionary.h		dictionary.h
iniparser.c		iniparser.c
iniparser.h		iniparser.h
inistrlib.c		inistrlib.c
inistrlib.h		inistrlib.h
karlin.c		karlin.c
karlin.h		karlin.h
r250.c		r250.c
r250.h		r250.h

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   BWT-SW - Local alignment tool that finds all alignments

   For descriptions of BWT-SW and other useful materials, visit
   www.cs.hku.hk/~ckwong3/bwtsw

   Copyright (C) 2006, Wong Chi Kwong.

   This software package is free software; you can redistribute it
   and/or modify it under the terms of the GNU General Public License
   as published by the Free Software Foundation; either version 2
   of the License, or (at your option) any later version.

   This software package is distributed in the hope that it will be 
   useful, but WITHOUT ANY WARRANTY; without even the implied warranty
   of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
   GNU General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
   02110-1301, USA.