rocker/rstudio:4.3.2

- we succesfully create a new docker image, all good. However the xdg-open still prevents me to launch the app locally from within the container. Cannot open a browser page from there??
mpascariu · Apr 7, 2024 · 02e2f53 · 02e2f53
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diff --git a/Dockerfile b/Dockerfile
@@ -1,31 +1,31 @@
-FROM rocker/verse:4.3.2
+FROM rocker/rstudio:4.3.2
 RUN apt-get update && apt-get install -y  gdal-bin libcurl4-openssl-dev libgdal-dev libgeos-dev libgeos++-dev libicu-dev libpng-dev libpq-dev libproj-dev libssl-dev libudunits2-dev libxml2-dev make pandoc zlib1g-dev && rm -rf /var/lib/apt/lists/*
 RUN mkdir -p /usr/local/lib/R/etc/ /usr/lib/R/etc/
 RUN echo "options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl', Ncpus = 4)" | tee /usr/local/lib/R/etc/Rprofile.site | tee /usr/lib/R/etc/Rprofile.site
 RUN R -e 'install.packages("remotes")'
 RUN Rscript -e 'remotes::install_version("tibble",upgrade="never", version = "3.2.1")'
-RUN Rscript -e 'remotes::install_version("glue",upgrade="never", version = "1.6.2")'
-RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.5")'
-RUN Rscript -e 'remotes::install_version("purrr",upgrade="never", version = "1.0.1")'
-RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.1.2")'
-RUN Rscript -e 'remotes::install_version("ggplot2",upgrade="never", version = "3.4.2")'
-RUN Rscript -e 'remotes::install_version("DBI",upgrade="never", version = "1.1.3")'
-RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.7.4.1")'
-RUN Rscript -e 'remotes::install_version("data.table",upgrade="never", version = "1.14.8")'
-RUN Rscript -e 'remotes::install_version("tidyr",upgrade="never", version = "1.3.0")'
-RUN Rscript -e 'remotes::install_version("leaflet",upgrade="never", version = "2.2.0")'
+RUN Rscript -e 'remotes::install_version("glue",upgrade="never", version = "1.7.0")'
+RUN Rscript -e 'remotes::install_version("htmltools",upgrade="never", version = "0.5.7")'
+RUN Rscript -e 'remotes::install_version("purrr",upgrade="never", version = "1.0.2")'
+RUN Rscript -e 'remotes::install_version("dplyr",upgrade="never", version = "1.1.4")'
+RUN Rscript -e 'remotes::install_version("DBI",upgrade="never", version = "1.2.2")'
+RUN Rscript -e 'remotes::install_version("shiny",upgrade="never", version = "1.8.0")'
+RUN Rscript -e 'remotes::install_version("data.table",upgrade="never", version = "1.15.0")'
+RUN Rscript -e 'remotes::install_version("tidyr",upgrade="never", version = "1.3.1")'
+RUN Rscript -e 'remotes::install_version("ggplot2",upgrade="never", version = "3.5.0")'
+RUN Rscript -e 'remotes::install_version("leaflet",upgrade="never", version = "2.2.1")'
 RUN Rscript -e 'remotes::install_version("testthat",upgrade="never", version = "3.1.10")'
-RUN Rscript -e 'remotes::install_version("RPostgres",upgrade="never", version = "1.4.5")'
+RUN Rscript -e 'remotes::install_version("RPostgres",upgrade="never", version = "1.4.6")'
 RUN Rscript -e 'remotes::install_version("golem",upgrade="never", version = "0.4.1")'
-RUN Rscript -e 'remotes::install_version("plotly",upgrade="never", version = "4.10.2")'
+RUN Rscript -e 'remotes::install_version("plotly",upgrade="never", version = "4.10.4")'
 RUN Rscript -e 'remotes::install_version("shinyjs",upgrade="never", version = "2.1.0")'
-RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.8.0")'
+RUN Rscript -e 'remotes::install_version("shinyWidgets",upgrade="never", version = "0.8.1")'
 RUN Rscript -e 'remotes::install_version("shinyBS",upgrade="never", version = "0.61.1")'
 RUN Rscript -e 'remotes::install_version("shinydashboard",upgrade="never", version = "0.7.2")'
-RUN Rscript -e 'remotes::install_version("MortalityLaws",upgrade="never", version = "2.0.3")'
-RUN Rscript -e 'remotes::install_version("sf",upgrade="never", version = "1.0-14")'
+RUN Rscript -e 'remotes::install_version("MortalityLaws",upgrade="never", version = "2.1.0")'
+RUN Rscript -e 'remotes::install_version("sf",upgrade="never", version = "1.0-15")'
 RUN Rscript -e 'remotes::install_version("leaflet.extras",upgrade="never", version = "1.0.0")'
-RUN Rscript -e 'remotes::install_version("DT",upgrade="never", version = "0.30")'
+RUN Rscript -e 'remotes::install_version("DT",upgrade="never", version = "0.32")'
 RUN mkdir /build_zone
 ADD . /build_zone
 WORKDIR /build_zone

diff --git a/pkg_build.R b/pkg_build.R
@@ -8,7 +8,23 @@ setwd(dirname(rstudioapi::getSourceEditorContext()$path))
 devtools::document()
 
 # dockerfile
-golem::add_dockerfile_shinyproxy()
+# see https://rocker-project.org/images/ for other Rocker images
+golem::add_dockerfile_shinyproxy(
+  paste0("rocker/rstudio:", R.Version()$major, ".", R.Version()$minor))
+
+# in Terminal
+# 1. place yourself in the folder where your docker file is created
+# 2. check that you have docker installed: docker --version
+# 3. create the image: docker build -t lemurapp:v2 .
+# 4. after 15min when all is ready: docker image ls
+# 5. test image locally: docker run lemurapp:v2
+
+# > options('shiny.port'=3838,shiny.host='0.0.0.0');library(lemur);lemur::run_app()
+# Loading required package: shiny
+# 
+# Listening on http://0.0.0.0:3838
+# sh: 1: xdg-open: not found.          ???????????
+
 
 # restart R
 rstudioapi::restartSession()