Update amplicon counting mode

1.3.13

Bugfix new mode capping at 5000 depth

Now works! Validation needed...

Convading working fixed sh errors. Also note not to stream files into…

… convading due opening and closing multiple times.

Amplicon coverage (-a) mode added to CountFromBams

(wip)
Also test release because

$CoNVaDING.pl
/usr/bin/env: perl -w: No such file or directory

Improved Bed sanity

Updated the regex to better check the lines in the file.

Zero target coverage fix

Update convading to handle div by zero execptions when dealing with z…

…ero target coverage bam/counts files

1.3.8

fix for missing first record error in countfrombam.

Feature: Throw an error when `samtools depth` == samtoolsdepthmaxcov

Feature: Throw an error when depth > samtoolsdepthmaxcov.

• Throws an understandable error when depth > samtoolsdepthmaxcov
• initial test based on the docs

Bigfix cmdline option

Fix for error : Samtools depth always downsamples to depth 1 when samtoolsdepthmaxcov is set

Bugfix release

• bugfix for div by zero error caused by safe execution
  • this effects the workflows starting from bam

Installed missing module for Statistics::Normality

minor bugfix did no show up on my system because installed it from the apt package manager