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Utilities for working with 3-point contact matrices

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Tools for three-point contact maps

This is a draft of a library to work with 3-point contact Hi-C contact maps, produced by experimental techniques such as Tri-C, or from polymer simulatiosn. It includes some basic tools for working with 3-point contact "tensors" such as:

  • Matrix balancing (Iterative correction)
  • Add transpose / leave triu elements only
  • Four different versions of 3-point "Expected" (still under debate on which one makes more sense)
  • Tools for extracting 3-point maps from polymer conformations

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  • Python 100.0%