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Melbourne Bioinformatics

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  1. MelBioInf_docs MelBioInf_docs Public

    Melbourne Bioinformatics documentation in markdown format

    HTML 99 78

  2. variant_calling_pipeline variant_calling_pipeline Public

    A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framework in Python.

    Python 31 26

  3. r-intro-biologists r-intro-biologists Public

    Forked from mblue9/r-intro-biologists

    HTML 8 3

  4. R-genomics R-genomics Public

    Forked from tracykteal/R-genomics

    Lesson on data analysis and visualization in R for genomics

    HTML 6 1

  5. data_tidying_and_visualisation data_tidying_and_visualisation Public

    Forked from claresloggett/data_tidying_and_visualisation

    Workshops on Pandas, data tidying, and visualisation

    Jupyter Notebook 5 4

  6. spank-private-tmp spank-private-tmp Public

    Forked from hpc2n/spank-private-tmp

    Slurm spank plugin to give each job private /tmp (and/or other dirs)

    C 4 1

Repositories

Showing 10 of 41 repositories
  • MelBioInf_docs Public

    Melbourne Bioinformatics documentation in markdown format

    melbournebioinformatics/MelBioInf_docs’s past year of commit activity
    HTML 99 78 8 0 Updated Sep 16, 2024
  • COMP90014_2024 Public
    melbournebioinformatics/COMP90014_2024’s past year of commit activity
    Jupyter Notebook 3 2 0 0 Updated Sep 13, 2024
  • R_gc_content Public

    Example Git repository with R code to calculate GC content of a FASTA file.

    melbournebioinformatics/R_gc_content’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 10, 2024
  • python_gc_content Public

    Example Git repository with Python code to calculate GC content of a FASTA file.

    melbournebioinformatics/python_gc_content’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Sep 10, 2024
  • training-infrastructure Public
    melbournebioinformatics/training-infrastructure’s past year of commit activity
    HCL 1 MIT 4 0 2 Updated Jul 11, 2024
  • COMP90016 Public

    Material assoicated with teaching the subject COMP90016

    melbournebioinformatics/COMP90016’s past year of commit activity
    CSS 2 MIT 1 0 0 Updated Jun 13, 2024
  • COMP90016-envs Public

    Environment config settings for COMP90016 workshops and assignments.

    melbournebioinformatics/COMP90016-envs’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Mar 10, 2024
  • COMP90014 Public
    melbournebioinformatics/COMP90014’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 3, 2023
  • COMP90014-conda Public

    Environment settings for workshops in Algorithms in Bioinformatics

    melbournebioinformatics/COMP90014-conda’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Oct 2, 2023
  • r-intro-biologists Public Forked from mblue9/r-intro-biologists
    melbournebioinformatics/r-intro-biologists’s past year of commit activity
    HTML 8 5 0 0 Updated Jul 14, 2023
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