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Vacc vs non analysis #98

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Vacc vs non analysis #98

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This PR includes:

  • Updates to readme.
  • Reorganization of couple of modules.
  • Updates to the code for analyzing Ab response to COVID antigens before and after vaccination.

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Codecov Report

Merging #98 (d07b522) into main (6b8b38d) will decrease coverage by 1.82%.
The diff coverage is 23.92%.

Impacted file tree graph

@@            Coverage Diff             @@
##             main      #98      +/-   ##
==========================================
- Coverage   35.99%   34.16%   -1.83%     
==========================================
  Files          21       21              
  Lines        2192     2245      +53     
==========================================
- Hits          789      767      -22     
- Misses       1403     1478      +75     
Flag Coverage Δ
unittests 34.16% <23.92%> (-1.83%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files Coverage Δ
...ero/array_analyzer/extract/background_estimator.py 15.55% <ø> (ø)
multiSero/array_analyzer/extract/constants.py 100.00% <ø> (ø)
multiSero/array_analyzer/extract/img_processing.py 13.63% <ø> (ø)
multiSero/array_analyzer/extract/txt_parser.py 65.33% <ø> (ø)
multiSero/array_analyzer/load/debug_plots.py 10.52% <ø> (ø)
multiSero/array_analyzer/utils/__init__.py 100.00% <ø> (ø)
multiSero/array_analyzer/utils/io_utils.py 90.27% <ø> (ø)
...Sero/array_analyzer/utils/visualize_elisa_spots.py 23.33% <ø> (ø)
...iSero/array_analyzer/workflows/interpolation_wf.py 0.00% <0.00%> (ø)
multiSero/plotting/plotting.py 10.56% <ø> (ø)
... and 12 more

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Δ = absolute <relative> (impact), ø = not affected, ? = missing data
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4 participants