JOSS paper #213
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| # This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: CI | |
| # define when this workflow is triggered | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| # cancel any currently running workflows in this same PR | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| # Use bash by default in all jobs | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| jobs: | |
| # run pre-commit which includes many formatting and linting tools | |
| pre-commit: | |
| name: Format | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.x" | |
| - uses: pre-commit/action@v3.0.1 | |
| with: | |
| extra_args: --hook-stage manual --all-files | |
| - name: Run PyLint | |
| run: pipx run nox -s pylint -- --output-format=github | |
| # Run tests and upload to codecov | |
| test: | |
| name: Check Python ${{ matrix.python-version }} on ${{ matrix.runs-on }} | |
| runs-on: ${{ matrix.runs-on }} | |
| if: | | |
| ${{!startsWith(github.event.head_commit.message, 'docs:') }} || | |
| ${{!startsWith(github.event.head_commit.message, 'style:') }} | |
| needs: [pre-commit] | |
| strategy: | |
| # Otherwise, the workflow would stop if a single job fails. We want to | |
| # run all of them to catch failures in different combinations. | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| runs-on: [ubuntu-latest, macos-latest, windows-latest] | |
| env: | |
| FORCE_COLOR: 3 | |
| NUMBA_DISABLE_JIT: "1" | |
| timeout-minutes: 30 | |
| steps: | |
| # Checkout current git repository | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Switch to Current Branch | |
| run: git checkout ${{ env.BRANCH }} | |
| - name: Get current week number of year | |
| id: date | |
| run: echo "date=$(date +%Y-W%W)" >> $GITHUB_OUTPUT # e.g., 2024-W19 | |
| # Install Micromamba with conda-forge dependencies | |
| - name: Setup Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| environment-file: env/testing_env.yml | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| post-cleanup: "all" | |
| cache-downloads: false | |
| # environment cache is persistent for one week. | |
| cache-environment-key: | |
| micromamba-environment-${{ steps.date.outputs.date }} | |
| # Install the package that we want to test | |
| - name: Install the package | |
| run: pip install --no-deps -e . | |
| - name: Run the tests | |
| run: >- | |
| pytest -m "not fetch and not issue" -ra --cov --cov-report=xml | |
| --cov-report=term --durations=20 | |
| - name: Upload coverage report | |
| uses: codecov/codecov-action@v4.3.1 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |