Simulations for the paper "Simulation-Based Calibration Checking for Bayesian Computation: The Choice of Test Quantities Shapes Sensitivity". Written in
R markdown, using the SBC R package.
Code is written in R markdown (.Rmd), rendered HTML can be found at
https://martinmodrak.github.io/sbc_test_quantities_paper.
Contents:
mvn.Rmd- the multivariate normal examples for the main body of the paper (Section 4 - Numerical Experiments)ordered_simplex.Rmd- the implementations of ordered simplex for the main body of the paper (Section 5 - Real-world case study)bernoulli.Rmd- Examples in the Appendix B
The code uses renv to recreate the same environment as we used to run the examples.
Run renv::restore() after loading the project.
The rendered site can be rebuilt with rmarkdown::render_site().