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  1. ONTmompS ONTmompS Public

    Get L. pneumophila ST from long-read or hybrid assemblies.

    Python 4

  2. SeqDepth SeqDepth Public

    Calculate sequencing depth of Illumina short-reads

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  3. susCovONT susCovONT Public

    Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

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  4. msctrees msctrees Public

    Scripts that are part of our MSc-students' work

  5. Asmbl Asmbl Public

    Assembly and quality assessment of Illumina short-reads

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  6. ont-basecalling ont-basecalling Public

    Script for ONT-basecalling

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