Chemovesicle #161
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This pull request introduces 1 alert when merging efb26a8 into 19093eb - view on LGTM.com new alerts:
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This pull request introduces 1 alert when merging eb6ff0c into 19093eb - view on LGTM.com new alerts:
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This pull request introduces 1 alert when merging eb6ff0c into 8bb71d5 - view on LGTM.com new alerts:
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Phi-subgrid interaction, vesicles and 2,3 and 4-body potentials now work much better.
Corresponding attribute in colloid.h (localmobility) Corresponding function in subgrid.c
==> Space dependant mobility
- can now be turned on/off in input file
- defaults to physics mobility when turned off
- map created around each colloid, assigning colloid->s.localmobility in a region of
size colloid->s.localrange around each colloid
==> The force that PHI generates on the colloid due to the PHI-SUBGRID interaction is now
calculated using centered difference instead of analytic gradient of U.
This is done in interaction.c. Force balance is now enforced exactly.
==> field_t * subgrid_flux has new name "subgrid_potential"
==> Added communication between processes to allow center of mass update of the central
subgrid particle. This is done in colloid_sums.c and subgrid.c.
==> Visualization of mobility_map slices in ludwig.c (temporary but I need to commit
ludwig.c)
==> Duplicates of bond_harmonic structures to allow for 3 different springs, each with
their own k and l0.
- utility to create vesicle input file
Added subgrid_phi_production Central now updated like all the other (no centerofmass update) Still the possibility to change this with broadcasting of dr Added ishole attribute
…s in write_hexasphere
…ticles with symmetric_ll
…instead of just rmax < wcell
…ixed important bug in subgrid.c which broke conservation of phi+psi
… fluid when using external gradient, added psi<->phi with conservation
…at they can be used with or without hydro
…nt when using psi_gradmu_outside_vesicle_only or not
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New potential for subgrid particles