Bioscript

Some shell, python, perl script for my own bioinformatics tasks.

Script Descriptions

replace_str.sh for data mapping and replacement
fasta_gi.sh remove all information in fasta header except needed one define by a given number and save the header information in a table

sample.py python script template file, adapt this to a working script
gb2fasta.py convert genbank file to fasta, faa, fna file and extract CDS information
gbinfo.py Extract genome information(length, gc, etc.)

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
specific_work		specific_work
README.md		README.md
all2all_blast.sh		all2all_blast.sh
fasta_header.sh		fasta_header.sh
gb2fasta.py		gb2fasta.py
gbinfo.py		gbinfo.py
merge.pl		merge.pl
replace_str.sh		replace_str.sh
sample.py		sample.py