add dockerfile for csvtoolkit

lifebit-ai · Dec 23, 2021 · 1b82eec · 1b82eec
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diff --git a/containers/csvkit/Dockerfile b/containers/csvkit/Dockerfile
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+FROM nfcore/base:1.9
+LABEL authors="ines@lifebit.ai" \
+      description="Docker image containing csvkit toolkit, including in2csv"
+
+COPY environment.yml /
+RUN conda env create -f /environment.yml && conda clean -a
+ENV PATH /opt/conda/envs/csvkit/bin:$PATH
diff --git a/containers/csvkit/environment.yml b/containers/csvkit/environment.yml
@@ -0,0 +1,9 @@
+name: csvkit
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+  - anaconda
+dependencies:
+  - python=3.8
+  - csvkit=1.0.5