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@krishnanlab

Krishnan Lab

Laboratory for Computational Genomics and Biomedical Data Science
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  1. PecanPy PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    Python 149 22

  2. teaching teaching Public

    Courses & workshops led by members of the Krishnan Lab.

    Jupyter Notebook 23 19

  3. txt2onto txt2onto Public

    Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.

    Python 23 5

  4. obnb obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    Python 20

  5. PyGenePlexus PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    Python 20 3

  6. RNAseq_coexpression RNAseq_coexpression Public

    In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.

    HTML 11 3

Repositories

Showing 10 of 29 repositories
  • pydab Public

    A _blazingly fast_ Python package for modifying and converting DAB files

    krishnanlab/pydab’s past year of commit activity
    Python 3 MIT 0 3 6 Updated Aug 6, 2024
  • obnb Public

    A Python toolkit for setting up benchmarking dataset using biomedical networks

    krishnanlab/obnb’s past year of commit activity
    Python 20 MIT 0 55 6 Updated Aug 6, 2024
  • PecanPy Public

    A fast, parallelized, memory efficient, and cache-optimized Python implementation of node2vec

    krishnanlab/PecanPy’s past year of commit activity
    Python 149 BSD-3-Clause 22 15 (1 issue needs help) 6 Updated Aug 6, 2024
  • PyGenePlexus Public

    A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input gene list.

    krishnanlab/PyGenePlexus’s past year of commit activity
    Python 20 3 12 6 Updated Aug 6, 2024
  • geneplexus-app-v2 Public

    GenePlexus App - backend (cloud functions) and frontend

    krishnanlab/geneplexus-app-v2’s past year of commit activity
    TypeScript 2 0 10 1 Updated Aug 2, 2024
  • .github Public
    krishnanlab/.github’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 6 Updated Aug 1, 2024
  • Age-sex_signatures_in_humans_code Public

    code for Human pan-body age- and sex-specific molecular phenomena inferred from public transcriptome data using machine learning

    krishnanlab/Age-sex_signatures_in_humans_code’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 10, 2024
  • txt2onto2.0 Public

    Public repo for txt2onto2.0

    krishnanlab/txt2onto2.0’s past year of commit activity
    Python 1 BSD-3-Clause 0 0 0 Updated Jun 18, 2024
  • SNNomics Public

    Ranking the similarities of omics samples using siamese neural networks

    krishnanlab/SNNomics’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 8, 2024
  • geneplexus_app Public
    krishnanlab/geneplexus_app’s past year of commit activity
    HTML 1 BSD-3-Clause 0 2 0 Updated Feb 13, 2024
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