Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

adjustments for hdf5 files #8

Open
wants to merge 6 commits into
base: main
Choose a base branch
from

Conversation

EmmaVanPuyenbr
Copy link
Contributor

  1. in the config file you can now also add hdf5 or h5 extensions for the images

    • input_extension_images and output_extension_image can have [hdf5 or h5]
    • dataset_name is the name you gave to the dataset in the hdf5 dataset containing the image/hypercube
  2. the settings are adjusted so it can also calculate the minimal dimension of the hdf5 file and that settings.dataset_name can be used

  3. read_input_image and save_box are updated to read in and save hdf5 files. the hdf5 files are converted to a numpy array.

  4. h5py is added to the requirements.txt (correct without version?)

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant