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jgrss/resunet attn #40

Merged
merged 226 commits into from
Jan 3, 2023
Merged

jgrss/resunet attn #40

merged 226 commits into from
Jan 3, 2023

Commits on Nov 16, 2022

  1. add orientation

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    jgrss committed Nov 16, 2022
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Commits on Nov 18, 2022

  1. removed orientation

    @jgrss
    jgrss committed Nov 18, 2022
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  2. added data compression

    @jgrss
    jgrss committed Nov 18, 2022
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  3. removed variable

    @jgrss
    jgrss committed Nov 18, 2022
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Commits on Nov 19, 2022

  1. remove argument

    @jgrss
    jgrss committed Nov 19, 2022
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  2. removed import

    @jgrss
    jgrss committed Nov 19, 2022
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  3. change crop and crop-type loss

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    jgrss committed Nov 19, 2022
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  4. replaced torch.save with joblib

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    jgrss committed Nov 19, 2022
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  5. replace torch.load with joblib.load

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    jgrss committed Nov 19, 2022
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Commits on Nov 22, 2022

  1. fix crop-type loss

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    jgrss committed Nov 22, 2022
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  2. fix crop-type loss

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    jgrss committed Nov 22, 2022
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  3. fix crop-type loss

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    jgrss committed Nov 22, 2022
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  4. modified the README

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    jgrss committed Nov 22, 2022
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  5. changed sign

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    jgrss committed Nov 22, 2022
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  6. test chunk size

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    jgrss committed Nov 22, 2022
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  7. edit nodata

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    jgrss committed Nov 22, 2022
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  8. pin chunksize

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    jgrss committed Nov 22, 2022
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Commits on Nov 25, 2022

  1. remove l2

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    jgrss committed Nov 25, 2022
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  2. add missing None

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    jgrss committed Nov 25, 2022
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Commits on Nov 28, 2022

  1. add args

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    jgrss committed Nov 28, 2022
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  2. add args

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    jgrss committed Nov 28, 2022
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  3. add dexined

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    jgrss committed Nov 28, 2022
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  4. add args

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    jgrss committed Nov 28, 2022
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Commits on Nov 29, 2022

  1. added pixel weights

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    jgrss committed Nov 29, 2022
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  2. edits

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    jgrss committed Nov 29, 2022
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  3. edits

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    jgrss committed Nov 29, 2022
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  4. changed model size

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    jgrss committed Nov 29, 2022
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  5. remove pixel weights

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    jgrss committed Nov 29, 2022
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  6. modified activations

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    jgrss committed Nov 29, 2022
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  7. modified arg

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    jgrss committed Nov 29, 2022
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  8. formatting

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    jgrss committed Nov 29, 2022
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  9. add args

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    jgrss committed Nov 29, 2022
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Commits on Nov 30, 2022

  1. change edge

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    jgrss committed Nov 30, 2022
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  2. changed edge layer

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    jgrss committed Nov 30, 2022
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  3. removed batchnorm

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    jgrss committed Nov 30, 2022
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  4. edges

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    jgrss committed Nov 30, 2022
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  5. simplify prediction type

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    jgrss committed Nov 30, 2022
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  6. fixed bnorm size

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    jgrss committed Nov 30, 2022
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Commits on Dec 3, 2022

  1. remove unused args

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    jgrss committed Dec 3, 2022
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  2. fix batchnorm dims

    @jgrss
    jgrss committed Dec 3, 2022
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  3. return last star

    @jgrss
    jgrss committed Dec 3, 2022
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  4. add crop star loss

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    jgrss committed Dec 3, 2022
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Commits on Dec 5, 2022

  1. change namedtuple lookup

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    jgrss committed Dec 5, 2022
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  2. remove convstar norm and activation

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    jgrss committed Dec 5, 2022
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  3. added missing arg

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    jgrss committed Dec 5, 2022
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  4. added option to delete predict dataset

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    jgrss committed Dec 5, 2022
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  5. added check for empty .pt list

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    jgrss committed Dec 5, 2022
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  6. spatial partitions must be lat/lon

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    jgrss committed Dec 5, 2022
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  7. added warning

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    jgrss committed Dec 5, 2022
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  8. temporary

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    jgrss committed Dec 5, 2022
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  9. revert

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    jgrss committed Dec 5, 2022
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  10. use concat

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    jgrss committed Dec 5, 2022
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  11. fix dimension count

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    jgrss committed Dec 5, 2022
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  12. fix dimension count

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    jgrss committed Dec 5, 2022
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  13. change default RNN layers

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    jgrss committed Dec 5, 2022
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  14. remove first crop loss

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    jgrss committed Dec 5, 2022
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Commits on Dec 6, 2022

  1. removed unused import

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    jgrss committed Dec 6, 2022
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  2. removed unused import

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    jgrss committed Dec 6, 2022
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  3. updates

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    jgrss committed Dec 6, 2022
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Commits on Dec 12, 2022

  1. rnn

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    jgrss committed Dec 12, 2022
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  2. test boundary loss

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    jgrss committed Dec 12, 2022
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  3. create weighted boundary loss

    @jgrss
    jgrss committed Dec 12, 2022
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  4. create modules

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    jgrss committed Dec 12, 2022
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  5. added label smoothing and class weights

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    jgrss committed Dec 12, 2022
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  6. remove boundary loss

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    jgrss committed Dec 12, 2022
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  7. change RNN loss

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    jgrss committed Dec 12, 2022
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  8. change RNN loss

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    jgrss committed Dec 12, 2022
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Commits on Dec 14, 2022

  1. spatial partition sampling

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    jgrss committed Dec 14, 2022
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  2. better check for partition name

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    jgrss committed Dec 14, 2022
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  3. we do not need random seed for predictions

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    jgrss committed Dec 14, 2022
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Commits on Dec 15, 2022

  1. added arg

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    jgrss committed Dec 15, 2022
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  2. make path setup more general

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    jgrss committed Dec 15, 2022
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  3. added temperature scaling

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    jgrss committed Dec 15, 2022
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  4. lowered LBFGS iterations

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    jgrss committed Dec 15, 2022
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  5. change LBFGS args

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    jgrss committed Dec 15, 2022
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  6. add temperature scaling to predictor

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    jgrss committed Dec 15, 2022
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  7. test boundary loss

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    jgrss committed Dec 15, 2022
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  8. change model

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    jgrss committed Dec 15, 2022
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  9. add multi-head unet

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    jgrss committed Dec 15, 2022
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  10. change conv

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    jgrss committed Dec 15, 2022
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  11. add skip connections

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    jgrss committed Dec 15, 2022
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  12. test focal loss

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    jgrss committed Dec 15, 2022
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  13. stacked RNN layers

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    jgrss committed Dec 15, 2022
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  14. remove boundary loss

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    jgrss committed Dec 15, 2022
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  15. remove regression sigmoid

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    jgrss committed Dec 15, 2022
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Commits on Dec 19, 2022

  1. created a resunet attention version

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    jgrss committed Dec 19, 2022
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  2. formatting

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    jgrss committed Dec 19, 2022
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  3. removed call dunder

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    jgrss committed Dec 19, 2022
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  4. fixed attention

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    jgrss committed Dec 19, 2022
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  5. remove boundary loss; change AdamW eps and weight_decay

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    jgrss committed Dec 19, 2022
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  6. separated layers

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    jgrss committed Dec 19, 2022
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Commits on Dec 20, 2022

  1. reconfigured residual layer

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    jgrss committed Dec 20, 2022
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  2. test attention layers

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    jgrss committed Dec 20, 2022
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  3. rearrangement

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    jgrss committed Dec 20, 2022
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  4. reconfigure attention blocks

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    jgrss committed Dec 20, 2022
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  5. use multi-blocks

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    jgrss committed Dec 20, 2022
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  6. test temporal conv

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    jgrss committed Dec 20, 2022
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  7. lower kernel size

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    jgrss committed Dec 20, 2022
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  8. make residual convolutions 3x3

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    jgrss committed Dec 20, 2022
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  9. remove temporal convolution

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    jgrss committed Dec 20, 2022
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  10. change RNN inputs from 32 to 64

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    jgrss committed Dec 20, 2022
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  11. functions to modules

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    jgrss committed Dec 20, 2022
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  12. remove deep supervision arg

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    jgrss committed Dec 20, 2022
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  13. fixed Sequential input

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    jgrss committed Dec 20, 2022
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  14. test additional dilations

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    jgrss committed Dec 20, 2022
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  15. test model without res convs

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    jgrss committed Dec 20, 2022
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  16. tidy up

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    jgrss committed Dec 20, 2022
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  17. make fully res

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    jgrss committed Dec 20, 2022
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  18. test resunet

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    jgrss committed Dec 20, 2022
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  19. name change

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    jgrss committed Dec 20, 2022
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  20. add tanimoto with complement loss

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    jgrss committed Dec 20, 2022
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  21. change default filters from 64 to 32

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    jgrss committed Dec 20, 2022
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  22. testing

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    jgrss committed Dec 20, 2022
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  23. add sigmoid layer on distance output

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    jgrss committed Dec 20, 2022
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  24. change loss

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    jgrss committed Dec 20, 2022
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  25. added reference

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    jgrss committed Dec 20, 2022
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  26. added fractal attention layer

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    jgrss committed Dec 20, 2022
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  27. test resnet

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    jgrss committed Dec 20, 2022
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  28. added lr-based depth setting

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    jgrss committed Dec 20, 2022
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  29. replaced channel attention with fractal

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    jgrss committed Dec 20, 2022
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  30. added trainable fractal attention gamma param

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    jgrss committed Dec 20, 2022
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  31. added lightning model name option

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    jgrss committed Dec 20, 2022
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  32. added lightning model name option

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    jgrss committed Dec 20, 2022
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  33. added gamma param to res layers

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    jgrss committed Dec 20, 2022
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Commits on Dec 21, 2022

  1. added license statement

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    jgrss committed Dec 21, 2022
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  2. simplified logic

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    jgrss committed Dec 21, 2022
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  3. cleanup

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    jgrss committed Dec 21, 2022
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  4. added learned sigmoid function and removed res gamma

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    jgrss committed Dec 21, 2022
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  5. removed attention gamma

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    jgrss committed Dec 21, 2022
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  6. remove edge from temperature scaling; support edge as sigmoid

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    jgrss committed Dec 21, 2022
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  7. removed res gamma

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    jgrss committed Dec 21, 2022
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  8. check if edge temperature exists

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    jgrss committed Dec 21, 2022
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  9. comments

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    jgrss committed Dec 21, 2022
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  10. write predicted edges as 2d

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    jgrss committed Dec 21, 2022
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  11. formatting

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  12. check predicted edge dimension

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  13. revert edge sigmoid to softmax

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    jgrss committed Dec 21, 2022
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  14. re-add edge to temperature scaling

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    jgrss committed Dec 21, 2022
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  15. remove edge sigmoid

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    jgrss committed Dec 21, 2022
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  16. check edge dimensions

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    jgrss committed Dec 21, 2022
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  17. remove sigmoid class

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    jgrss committed Dec 21, 2022
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  18. change expected edge prediction shape

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    jgrss committed Dec 21, 2022
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  19. assume edge predictions are softmax

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    jgrss committed Dec 21, 2022
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  20. minor docstring change

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    jgrss committed Dec 21, 2022
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  21. test resnet without attention

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    jgrss committed Dec 21, 2022
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  22. change UNet3Psi from double to single convs

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    jgrss committed Dec 21, 2022
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  23. set depth

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    jgrss committed Dec 21, 2022
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  24. remove dropout

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    jgrss committed Dec 21, 2022
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  25. bump geowombat

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    jgrss committed Dec 21, 2022
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  26. added resblock

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    jgrss committed Dec 21, 2022
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  27. added resblock

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    jgrss committed Dec 21, 2022
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  28. changed rnn layers

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    jgrss committed Dec 21, 2022
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  29. docstring

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  30. added Tanimoto complement for single-class inputs

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    jgrss committed Dec 21, 2022
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  31. edge output = 1

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    jgrss committed Dec 21, 2022
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  32. use edge sigmoid and remove boundary loss

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    jgrss committed Dec 21, 2022
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  33. edge output = 1

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  34. single-layer edge output

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    jgrss committed Dec 21, 2022
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  35. sigmoid edge output

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    jgrss committed Dec 21, 2022
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  36. single edge output

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    jgrss committed Dec 21, 2022
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  37. added helper function

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    jgrss committed Dec 21, 2022
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  38. change edge output to 2

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    jgrss committed Dec 21, 2022
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  39. remove imports

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    jgrss committed Dec 21, 2022
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  40. remove edge sigmoid

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    jgrss committed Dec 21, 2022
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  41. removed boundary loss

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    jgrss committed Dec 21, 2022
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  42. loss sum to mean

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    jgrss committed Dec 21, 2022
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  43. added activation option

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    jgrss committed Dec 21, 2022
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  44. condition syntax change

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    jgrss committed Dec 21, 2022
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  45. reordered imports

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    jgrss committed Dec 21, 2022
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  46. fixed attention input channels

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    jgrss committed Dec 21, 2022
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  47. added helper function to get labels

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    jgrss committed Dec 21, 2022
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  48. add amsgrad

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    jgrss committed Dec 21, 2022
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  49. use num_workers

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    jgrss committed Dec 21, 2022
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  50. added arg for batch loading

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    jgrss committed Dec 21, 2022
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  51. change loss

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    jgrss committed Dec 21, 2022
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  52. remove sigmoid

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    jgrss committed Dec 21, 2022
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Commits on Dec 25, 2022

  1. remove sigmoid

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    jgrss committed Dec 25, 2022
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  2. add batch stack

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    jgrss committed Dec 25, 2022
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  3. removed layers

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    jgrss committed Dec 25, 2022
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  4. reconfigure

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    jgrss committed Dec 25, 2022
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  5. fix inputs

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    jgrss committed Dec 25, 2022
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  6. add rnn conv bias

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    jgrss committed Dec 25, 2022
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  7. deep supervision

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    jgrss committed Dec 25, 2022
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  8. unused layer

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    jgrss committed Dec 25, 2022
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  9. fix attention

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    jgrss committed Dec 25, 2022
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  10. formatting

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    jgrss committed Dec 25, 2022
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Commits on Dec 26, 2022

  1. reconfigure

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    jgrss committed Dec 26, 2022
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Commits on Dec 29, 2022

  1. formatting

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    jgrss committed Dec 29, 2022
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  2. use the same number of layers

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    jgrss committed Dec 29, 2022
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  3. cleanup

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    jgrss committed Dec 29, 2022
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  4. added new module

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    jgrss committed Dec 29, 2022
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  5. added pool layers

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    jgrss committed Dec 29, 2022
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  6. added connection

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    jgrss committed Dec 29, 2022
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  7. index list

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    jgrss committed Dec 29, 2022
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  8. add sigmoid on distance and use tanimoto

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    jgrss committed Dec 29, 2022
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  9. simplifiy first connections

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    jgrss committed Dec 29, 2022
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  10. deep supervision

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    jgrss committed Dec 29, 2022
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  11. deep supervision

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    jgrss committed Dec 29, 2022
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  12. deep supervision

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    jgrss committed Dec 29, 2022
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  13. added reference

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    jgrss committed Dec 29, 2022
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  14. remove extra layer

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    jgrss committed Dec 29, 2022
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  15. no attention

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    jgrss committed Dec 29, 2022
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  16. add documentation

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    jgrss committed Dec 29, 2022
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  17. decrease weight decay

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    jgrss committed Dec 29, 2022
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  18. remove attention

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    jgrss committed Dec 29, 2022
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  19. remove conv

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    jgrss committed Dec 29, 2022
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  20. add learnable param to distance sigmoid

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    jgrss committed Dec 29, 2022
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  21. spelling error

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    jgrss committed Dec 29, 2022
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  22. changed args

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    jgrss committed Dec 29, 2022
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  23. test attention

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    jgrss committed Dec 29, 2022
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  24. added crop-type option

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    jgrss committed Dec 29, 2022
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  25. added crop-type option

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    jgrss committed Dec 29, 2022
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  26. added crop-type option

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    jgrss committed Dec 29, 2022
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  27. removed experimental fc layer

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    jgrss committed Dec 29, 2022
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Commits on Dec 30, 2022

  1. added final crop-type model

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    jgrss committed Dec 30, 2022
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  2. better support for crop-type

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    jgrss committed Dec 30, 2022
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Commits on Jan 2, 2023

  1. added missing args

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    jgrss committed Jan 2, 2023
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  2. fix unet3

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    jgrss committed Jan 2, 2023
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  3. added missing args

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    jgrss committed Jan 2, 2023
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  4. remove 1

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    jgrss committed Jan 2, 2023
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Commits on Jan 3, 2023

  1. Change file name to avoid pytest

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    jgrss committed Jan 3, 2023
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  2. update CI install

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    jgrss committed Jan 3, 2023
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  3. rename tests

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    jgrss committed Jan 3, 2023
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  4. update test data loading

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    jgrss committed Jan 3, 2023
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  5. move test location

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    jgrss committed Jan 3, 2023
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  6. bump torch test version

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    jgrss committed Jan 3, 2023
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