Releases: jeremymcrae/dnm_cohorts
Releases · jeremymcrae/dnm_cohorts
1.7.1
1.7.0
- record each study that a variant was reported in
- better variant deduplication
1.6.1
import chrX de novos for Fu et al samples from Zhou et al
1.6.0
added data for Yuen et al, Fu et al, Zhou et al
1.5.1
- fixed doi for Halldorsson samples in cohort.txt.gz
1.5.0
- added Halldorsson et al de novos, and removed Jonsson et al variants, since the Jonsson samples are a subset of Halldorsson
1.4.1
- fixed issue with duplicate individuals reported in different studies, if their phenotypes differed between the studies
- cohorts table now includes each study a person was included in
- updated urls to supplementary data tables for updated Nature journal supplementary data url structure
- updated pdf parsing for new pdfminer version
- tidied up argument parsing for main script
1.3.0
- added Kaplanis et al dataset
- added Jin et al dataset
- added Jonsson et al dataset
- improved asynchronous consequence requests by using trio/asks instead of asyncio/aiohttp
1.2.0
- use HPO terms for phenotypes
- added An et al dataset
- removed duplicate individuals with differing sexes
- define genome build per variant, since we now include studies on both grch37 and grch38
- allow lifting to alternate genome builds
- fix random seed, to make mock IDs repeatable
- asynchronously pull consequences from ensembl
1.1.0
- refactored package
- added readme
- added main script as entry point
- added Homsy et al dataset
- refactored code for downloading de novo datasets, fixing alleles, and getting consequences from ensembl