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Releases: jeremymcrae/dnm_cohorts

1.7.1

18 Aug 18:18
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  • minor release, don't install dependencies for building dataset unless required

1.7.0

16 Jun 22:35
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  • record each study that a variant was reported in
  • better variant deduplication

1.6.1

27 Jan 18:09
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import chrX de novos for Fu et al samples from Zhou et al

1.6.0

20 Jan 18:40
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1.5.1

28 Sep 19:13
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  • fixed doi for Halldorsson samples in cohort.txt.gz

1.5.0

28 Sep 18:02
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  • added Halldorsson et al de novos, and removed Jonsson et al variants, since the Jonsson samples are a subset of Halldorsson

1.4.1

10 Feb 18:47
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  • fixed issue with duplicate individuals reported in different studies, if their phenotypes differed between the studies
  • cohorts table now includes each study a person was included in
  • updated urls to supplementary data tables for updated Nature journal supplementary data url structure
  • updated pdf parsing for new pdfminer version
  • tidied up argument parsing for main script

1.3.0

10 Feb 19:11
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  • added Kaplanis et al dataset
  • added Jin et al dataset
  • added Jonsson et al dataset
  • improved asynchronous consequence requests by using trio/asks instead of asyncio/aiohttp

1.2.0

10 Feb 19:07
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  • use HPO terms for phenotypes
  • added An et al dataset
  • removed duplicate individuals with differing sexes
  • define genome build per variant, since we now include studies on both grch37 and grch38
  • allow lifting to alternate genome builds
  • fix random seed, to make mock IDs repeatable
  • asynchronously pull consequences from ensembl

1.1.0

10 Feb 18:49
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  • refactored package
  • added readme
  • added main script as entry point
  • added Homsy et al dataset
  • refactored code for downloading de novo datasets, fixing alleles, and getting consequences from ensembl