Scripts for Barbour et al. ERCC2 mutations alter the genomic distribution pattern of somatic mutations and are independently prognostic in bladder cancer

Scripts for analysis associated with Figures 1, 6, and 7 from the manuscript avaliable on this repository

Access to scripts for analysis associate with Genomics England data (Figures 2-5, and scripts that generate underlying data for Figure 7) require approved access from the Genomics England Research Network (https://www.genomicsengland.co.uk/research/academic/join-research-network).

Once access has been obtained, the location of the scripts on the GE Research Environement are listed in GE_analysis_scripts(Fig2-Fig5).sh