NOTE: this repository is archived to support workflow reproducibility. Active development continues at: https://github.com/icgc-argo-workflows/sanger-wgs-variant-calling
This repository maintains the Nextflow workflow code for Sanger WGS somatic variant calling. The underlying containerized variant calling tools include CaVEMan, Pindel, ASCAT and BRASS, which are originated from https://github.com/cancerit/dockstore-cgpwgs.