Deployment

$\textbf{\Huge simulator}$

Copyright Notice

'simulator' is a job scheduling simulator. Our work makes use of Inria's Batsim (https://batsim.readthedocs.io/) simulator.

We have added:

a node fault model with repair times
simulated checkpointing
reservations
some work with cores
other useful additions
real batsim checkpointing for longer simulations

These were added to 6 scheduling algorithms:

fcfs_fast2
easy_bf_fast2
easy_bf_fast2_holdback
easy_bf2
easy_bf3
conservative_bf $\space \space \space \space \space \space \mathbb{\color{darkred}\longleftarrow} \text{\color{darkred} reservations only work with this algorithm}$

In addition to this is also a framework for spinning up simulations and for post processing.

The initial deployment of our code is all handled by one deploy script. The running of a simulation or simulations can all be done by writing a config file and running a single script.

Analysis of the simulation data is mostly up to you, but there are some helpful jupyter notebooks to faciliate this by looking at our code and modifying it for your needs.

Deployment

Here you will learn how to deploy the simulator in an environment right for you.

Requirements

Requirements (bare-metal and charliecloud):

linux os

gcc >= 8.0 (bare-metal needs c++17, charliecloud method may allow for previous versions)

cmake >= 3.15.4 (maybe previous versions. at least 3.11)

python == 3.6

python3-venv

pip3

typical build system

make

build

git

patch (bare-metal)

libtool (if not installed, deployment can attempt to build and install)

pkg-config (if not installed, deployment can attempt to build and install)

build-essential (ubuntu package. named other things on other distros)

bash shell

Requirements (docker method):

linux os

git

docker running and working

Deploy Methods

There are 4 methods of building and deploying our batsim applications.

bare-metal

will compile and install everything you need into a directory

docker

will compile and install everything you need into a docker container

currently there is no option of parallelism with this method

charliecloud with internet

charliecloud is a container technology that works when docker is not an option (think clusters without docker)

will compile and install everything you need into a directory

charliecloud without internet

charliecloud is a container technology that works when docker is not an option (think clusters without docker)

meant to be run where you have internet and then copy a folder (3.5GB) to the cluster without internet

will compile and install everything you need and will be packaged into a directory to be copied to your setup without internet, then you can attempt to unpackage it there.

Deploy: How To...
All of the methods rely on running .../simulator/basefiles/deploy.sh. One can run deploy.sh --help for complete usage info.

Bare-Metal
obtain the code

change directories

deploy
git clone https://cswalke1:ekhr1Q_mL356zvCt_p2B@gitlab.newmexicoconsortium.org/lanl-ccu/simulator.git
cd simulator/basefiles
./deploy.sh -f bare-metal --prefix $(dirname $(pwd))
Docker
obtain the code

change directories

deploy
git clone https://cswalke1:ekhr1Q_mL356zvCt_p2B@gitlab.newmexicoconsortium.org/lanl-ccu/simulator.git
cd simulator/basefiles
./deploy.sh -f docker
CharlieCloud with Internet
obtain the code

change directories

deploy
git clone https://cswalke1:ekhr1Q_mL356zvCt_p2B@gitlab.newmexicoconsortium.org/lanl-ccu/simulator.git
cd simulator/basefiles
./deploy.sh -f charliecloud
CharlieCloud without Internet
obtain the code

change directories

deploy package

change directories

scp folder

ssh to remote

change directories

unpackage
git clone https://cswalke1:ekhr1Q_mL356zvCt_p2B@gitlab.newmexicoconsortium.org/lanl-ccu/simulator.git
cd simulator/basefiles
./deploy.sh -f charliecloud --no-internet --package
cd ../../

#to be modified for your method of sending a folder to your remote location and logging in to your remote location
scp -r ./batsim_packaged user@remote.org:/home/USER/
ssh user@remote.org


cd /home/USER/batsim_packaged
./deploy.sh -f charliecloud --no-internet --un-package

Make Sure Everything Works

Here you will learn how to test that your deployment works

You can make sure your particular deployment works by using our tests: .../simulator/basefiles/tests/test_simulator.py.

Keep in mind that SLURM tests assume the following:

You are on a cluster running SLURM

You have access to at least two (2) nodes, otherwise it's not much of a parallel test

Bare-Metal works
Read the following list of instructions and then perform the commands below it.

change directories (/path/to/simulator/basefiles)

edit batsim_environment.sh

source batsim_environment.sh

run test_simulator.py

make your selections:

choose local or slurm

choose bare-metal

choose either serial or parallel

serial will run 1 simulation per test, 1 at a time

parallel will give you options of how many simulations per test, and how many at a time per test

if local was chosen this will use background multiple processes

if slurm was chosen this will submit multiple jobs to SLURM

wait for results
cd /path/to/simulator/basefiles
# edit ./batsim_environment.sh   
# make sure you point prefix to /path/to/simulator (don't include basefiles in the path)
source batsim_environment.sh
test_simulator.py
Docker works
Read the following list of instructions and then perform the commands below it.

create and run a container from your "simulator_compile" image

change directories (should already be in the correct directory)

edit basefiles/batsim_environment.sh

source batsim_environment.sh

run test_simulator.py

make your selections:

choose local or slurm

choose docker

serial is the only option here, so the simulations will start immediately

wait for results
docker run -it --name sim_test simulator_compile:latest
inside docker> cd /home/sim/simulator/basefiles
inside docker> # edit ./batsim_environment.sh  # prefix should be /home/sim/simulator
inside docker> source batsim_environment.sh
inside docker> test_simulator.py
CharlieCloud works
Read the following list of instructions and then perform the commands below it.

change directories (/path/to/simulator/basefiles)

edit batsim_environment.sh

source batsim_environment.sh

run test_simulator.py

make your selections:

choose local or slurm

choose charliecloud

choose either serial or parallel

serial will run 1 simulation per test, 1 at a time

parallel will give you options of how many simulations per test, and how many at a time per test

if local was chosen this will use background multiple processes

if slurm was chosen this will submit multiple jobs to SLURM

wait for results
cd /path/to/simulator/basefiles
# edit ./batsim_environment.sh
# make sure you point prefix to /path/to/simulator (don't include basefiles in the path)
source batsim_environment.sh
test_simulator.py

How To Make a Config File - Crash Course

In this crash course you will learn:

Sweeps
Workloads
Options

Basic Outline

Here you will see what a basic outline of a config file is. It will give you a good overview of what is included in one.
    The general format of a config file:
    
    {       <------------------------------------   Opening curly brace to be proper json
    
        "Name1":{       <------------------------   The name of an experiment comes first.  You can have multiple experiments
                                                    in one config file and each will end up in it's own folder under the --output folder.
                                                    Notice the opening and closing curly brace.  Make sure you put a comma after the closing
                                                    curly brace if you plan on having another experiment in the same config file

                #                           \       Json does not allow for comments (unfortunately).  You may still want comments in your config,  
                # python/shell comment       \      however.  You can use all of these types of comments and it will get removed before parsing.
                // c/c++ style comment        \     Be aware that it can get difficult to trace down a simple mistake in your config when many 
                /* c/c++ block style comment  /     comments are used due to the line numbers being off and generally more clutter in your config.
                    Comments are fun.        /      But comments can make things a lot clearer, too. 
                    This comment is too.    /       The original and a stripped version will be in your --output folder.
                */                
                
                
                "input":{    <-------------------   Always make sure you have an input and an output in your experiment
                
                    "node-sweep":{  <------------   It is MOST advisable to always start with a node-sweep.  All other sweeps can come after this one
                    
                    },
                    "synthetic-workload":{ <-----   Always include either a synthetic-workload or a grizzly-workload after your sweeps
                    
                    },
                    "option":value,        <-----   Include any options that will affect all of the jobs on the outside of any sweep or workload
                
                },    <--------------------------   Make sure you separate your input options with commas, but also remember to separate input
                                                    and output with a comma
                "output":{   <-------------------   Again, always make sure you have an input and output in your experiment
                
                    "option":value,   <----------   Output is a bit simpler than input.  Just make sure it is valid json
                    "option":value
                
                }
        
        
        },     <---------------------------------   This closes the experiment and here we have a comma because we included another experiment "Name2"
        "Name2":{
            "input":{
            
                ...  <--------------------------    Make sure you replace this ellipsis with at least:
                                                        * a node-sweep
                                                        * a workload
            },
            "output":{
            
                ...  <--------------------------    You should replace ellipsis with at least:
                                                        * "AAE":true | "makespan":true
                
            }    <------------------------------    Close output
        }  <------------------------------------    Close "Name2"          
    }  <----------------------------------------    Close json
    
Sweeps

Learn what sweeps are and how to use them here.
Explanation of Sweeps

Here you will learn what Sweeps are.

Sweeps are what we call it when we make a parameterized option. When you start out you will have one job called 'experiment_1'. If you add a sweep that, say, sweeps over how many nodes your simulation will be using, then it will add to how many jobs you have.

Let's say you sweep from 1,000 nodes to 2,000 nodes with a step of 250. Then you will have:

experiment_1: 1000 nodes

experiment_2: 1250 nodes

experiment_3: 1500 nodes

experiment_4: 1750 nodes

experiment_5: 2000 nodes

Now, the way sweeps work is that they loop over what is already there. So if we add a failure sweep like SMTBF (System Mean Time Between Failure) after the node sweep, then it will take the first parameter of the SMTBF sweep and set it to the experiments 1-5 above. But then it will copy those 5 experiments and set the failure parameter to the second parameter of the SMTBF sweep.

Let's say you sweep from a SMTBF of 20,000 seconds to 40,000 seconds with a step of 10,000. Then you will have:

experiment_1: 1000 nodes SMTBF: 20,000 sec

experiment_2: 1250 nodes SMTBF: 20,000 sec

experiment_3: 1500 nodes SMTBF: 20,000 sec

experiment_4: 1750 nodes SMTBF: 20,000 sec

experiment_5: 2000 nodes SMTBF: 20,000 sec

experiment_6: 1000 nodes SMTBF: 30,000 sec

experiment_7: 1250 nodes SMTBF: 30,000 sec

experiment_8: 1500 nodes SMTBF: 30,000 sec

experiment_9: 1750 nodes SMTBF: 30,000 sec

experiment_10: 2000 nodes SMTBF: 30,000 sec

experiment_11: 1000 nodes SMTBF: 40,000 sec

experiment_12: 1250 nodes SMTBF: 40,000 sec

experiment_13: 1500 nodes SMTBF: 40,000 sec

experiment_14: 1750 nodes SMTBF: 40,000 sec

experiment_15: 2000 nodes SMTBF: 40,000 sec

So I hope you can see how the experiments add up quickly.

We started with 5 node parameters

We added 3 SMTBF parameters

This totals 5 * 3 = 15 jobs

If we add another sweep after the SMTBF sweep with 4 parameters that would be 5 * 3 * 4 = 60 jobs

Types of Sweep Functions

Sweeps can parameterize in multiple ways. Here are the methods used:
(iMMS) integer Min Max Step
start from the minimum to the maximum (inclusive) with a step (can be negative)
"min":0,
"max":10,
"step":2
(fMMS) float Min Max Step

same as iMMS except you can use floating point numbers
(iR) integer Range
simply a list of integers
"range":[10,20,30,80]
(fR) float Range

same as iR except for floats
(iSR),(fSR) integer Sticky Range and float Sticky Range
just like iR and fR except it requires the amount of values to equal the amount of jobs made from sweeps before it. Instead of adding any more jobs, it sets the values contained in it to the jobs already there.
example:
"node-sweep":{"range":[1000,2000]},  //creates two jobs: experiment_1 and experiment_2
"SMTBF-sweep":{"sticky-range":[20000,30000]} 
// normally with "range" this would 
    //set 20,000 to experiment_1(1000 nodes) and experiment_2(2000 nodes) and 
    //set 30,000 to experiment_3(1000 nodes) and experiment_4(2000 nodes)
//sticky-range, however, will
    //set 20,000 to experiment_1(1000 nodes)
    //set 30,000 to experiment_2(2000 nodes)
    //and that's all  
//No experiment_3 or 4. It 'sticks' to what was there before.
(F) formula
used in conjunction with iR, fR, iSR, fSR, iMMS and fMMS. You can set a formula here with 'i' as your variable. Each number in your min/max/step or range will be passed in as 'i' to your formula and the result will be your number. Makes it easier to read.
Example:
"range":[2,3,4],
"formula":"i*3600"  // will make 2 hours, 3 hours, 4 hours. easier than 7200 sec,10800 sec,14400 sec
Example:
"min":1,
"max":5,
"step":1,
"formula":"(10**i)/i"  //'i' can be used multiple times.  Any python statement can be evaluated here.
Current Sweeps Available - (Functions Allowed)

Here are the current sweeps available and the parameterization allowed. All sweep names end in "-sweep"

checkpointError (fMMS,fR)

Used in our Application Efficiency tests. It adds/subtracts an error amount to optimal simulated checkpoint intervals

checkpoint (iMMS,iR)

The interval to use for simulated checkpoints. This value is an integer, but can also be set to "optimal".

coreCount (iMMS,iR)

How many cores per node. Currently only supported on fcfs_fast2, easy_bf_fast2, and easy_bf_fast2_holdback algorithms.

corePercent (fMMS,fR)

What percent of cores can be filled with 1 node jobs. Currently only supported on fcfs_fast2, easy_bf_fast2, and easy_bf_fast2_holdback algorithms.

jobs (iMMS,iR)

How many jobs out of the workload to use.

MTTR (fMMS,fR,F)

Mean Time To Repair. Used in conjunction with failures to set how long a repair lasts. It will come up with random repair times each time a machine goes down based on an exponential distribution.

node (fMMS,fR,F)

How many nodes the cluster will have.

performance (fMMS,fR)

Will increase/decrease the length of all jobs by this factor (floating point)

queueDepth (iMMS,iR)

In conservative_bf algorithm, will only schedule this amount of queued jobs before stopping. This will speed things up considerably.

repairTime (iMMS,iR,F)

Similar to MTTR, but, instead of a random MTTR, this will set a fixed repair time for the whole simulation.

reservation (None - check docs)

This is used in conjunction with conservative_bf algorithm to simulate reservations. There is a whole syntax to this, so one should look at the documentation for info on it.

sharePackingHoldback (iMMS,iR)

When using cores, this will holdback x amount of nodes for sharing jobs. All other nodes will not share jobs. Only used with easy_bf_fast2_holdback algorithm.

SMTBF (fMMS,fR,fSR,F)

System Mean Time Between Failures. Used as the primary source of failures. It will come up with random failure times with an exponential distribution, and will come up with a random machine to have the failure with a normal distribution.

has a compute-SMTBF-from-NMTBF option

Will treat the values generated from this sweep as NMTBF's (Node Mean Time Between Failure) and will compute the SMTBF from the amount of nodes for that experiment

submissionCompression (iMMS,iR,F)

will compress/expand the time between submissions by a factor.
Workloads

Here you will learn about the mandatory workload keys in a config file.
The following keys will be explained:

grizzly-workload

synthetic-workload

grizzly-workload

A grizzly-workload is named based on a certain 'grizzly' cluster at Los Alamos National Lab. It is a 1490 node cluster and a 2018 real workload was acquired from the months of January to November.

As long as the file the workload comes from conforms to the same requirements the 2018 workload conforms to, then the grizzly-workload is simply a 'real' workload that has options specific for it. Requirements for your own 'grizzly-workload' are laid out in .../simulator/basefiles/docs/User/User_Doc_Manual.pdf

Required Options

type

the type of profile to use: 'parallel_homogeneous' or 'delay'. With 'parallel_homogenous' run-time of a job is actually in terms of computational work done: flops/second. It just so happens that when machine-speed is set to 1 then it translates into time. 'delay' deals only with time. Though 'parallel_homogeneous' may seem more complicated, it is recommended since other options and algorithms may use this flops/second functionality, such as using cores.

machine-speed

used with 'parallel_homogeneous'. It is the amount of flops of computation done in 1 second. We highly recommend you set this to 1.

input

the 'grizzly' or 'grizzly-like' workload file you will use. 'sanitized_jobs.csv' is the 2018 workload file we use. Can be an absolute path or the name of a file in .../simulator/basefiles

time

the time interval you would like to use in the workload.

example: '03-01-2018:04-01-2018' would do March 1 till April 1.

example: ':' would do all of the file. From Jan to November in the 2018 file.

example: '06-01-2018:' or ':05-01-2018' From June on or From start to May respectively.

Additional Options

number-of-jobs

once a time period is chosen with time, you may choose how many of those jobs you want with this. Starts from the front of time with a positive number. Starts from the back with a negative number. Takes precedence over regular option number-of-jobs and the jobs-sweep, so it should not be set if using the jobs-sweep.

random-selection

used with 'number-of-jobs', will randomize which jobs are chosen.

example: 20 will seed the randomness with 20, making it deterministic

example: -1 will seed with time, making it random

submission-time

The time between submissions and randomness used. If omitted, will use the actual submission time in the input file. If set to '0:fixed', all jobs will submit at time zero.

syntax: <float>:<exp|fixed>. will use <float> seconds as the mean time ('exp'onential) or the actual time (fixed)

syntax: <float1>:<float2>:unif. will use a uniform distribution between <float1> and <float2>

wallclock-limit

the amount of time that a job is able to use. If omitted, will use the actual wallclock-limit from the input file.

syntax: <float>|'<int>%' a percent will be based off of the runtime of the job.

syntax: <string> either 'min:max[:seed]' or 'min%:max%[:seed]' where min:max are floats and min% and max% are '<int>%'. These are random numbers from min to max and an optional seed

example: '98%:102%:10' from 98% of runtime to 102% of runtime with a seed of 10

read-time

The amount of time to read in from a simulated checkpoint if checkpointing is turned on. Follows the same syntax as wallclock-limit. Mandatory if using checkpointing, but can be set to 0.

dump-time

The amount of time to write out a simulated checkpoint if checkpointing is turned on. Follows the same syntax as wallclock-limit. Mandatory if using checkpointing, but can be set to 0.

checkpoint-interval

The amount of time between successive writes of a simulated checkpoint on a per job basis. Follows the same syntax as wallclock-limit. Not mandatory since a system-wide simulated checkpoint interval can be set.

resv

Sets what reservation definition to use. Only used if you are simulating reservations of time, and only used with conservative_bf algorithm.

force-creation

Workloads go in a database and will be re-used if they have the right characteristics. If you want to roll the dice again you should force the creation of a new workload.

seed

A seed that can be used on all randomness of the workload creation. Otherwise it will use time, making it random unless individual seed options are used.

index

Will set the index for a workload. Suppose you made a random workload and it was added to the database. You then wanted to run the experiment again but wanted a different roll of the dice for randomness, you could choose force-creation or just give it another index. The benefit of using an index is that you could come back to using the same workload as long as the other workload options remained the same.

Regular Options That Effect Workloads

submission-compression

will compress/expand the time between submission of jobs

syntax: '<int>%' . below 100% compresses, above 100% expands

reservations- and reservation-sweep

will define a reservation. If resv is set for the workload then this changes the workload.

workload-ids

This option piggy-backs off the index idea.

Jobs and Runs

If you want different options you make multiple jobs in the form of experiment_# folders.

If those options make batsim use randomness and you want to do some statistics by running batsim multiple times you use 'runs' by setting avg-makespan in the 'output' section of your config.

Ids

In contrast, if you want to make multiple random workloads for statistics, then you use 'ids' which can also be used in tandem with 'runs', though this gets complicated and may not aggregate properly at the time of this writing.TODO.

syntax: '[<comma seperated range of ids>]', example: '[1,5,8,20]' , yes this is a string

syntax: 'min;max;step', example: '5;20;1'

number-of-jobs

Although number-of-jobs in the workload section takes precedence, number-of-jobs can be set in the regular options as well. This is purely for the benefit of the jobs-sweep.

synthetic-workload

A synthetic-workload is simply a completely, or almost completely, made up workload. There are many random options to give you the workload you require.

The reason we say 'almost completely' made up, is that there are 6 files that characterize different types of workloads based on the grizzly cluster. In fact 'wl2.csv' was made from the same distribution of jobs that is in a particular real grizzly workload.

Whether you use these files or not is completely up to you. We give you the tools to make a workload that suits you in the following list of options.

Required Options

type

the type of profile to use: 'parallel_homogeneous' or 'delay'. With 'parallel_homogenous' run-time of a job is actually in terms of computational work done: flops/second. It just so happens that when machine-speed is set to 1 then it translates into time. 'delay' deals only with time. Though 'parallel_homogeneous' may seem more complicated, it is recommended since other options and algorithms may use this flops/second functionality, such as using cores.

machine-speed

used with 'parallel_homogeneous'. It is the amount of flops of computation done in 1 second. We highly recommend you set this to 1.

number-of-jobs

The total number of jobs to make

number-of-resources

The number of resources that each job will use

syntax: '<int>:fixed'

all jobs will have a fixed <int> amount of resources

syntax: '<int1>:<int2>:unif'

jobs will have from <int1> to <int2> uniformally random number of resources

syntax: '<float1>:<float2>:norm'

jobs will have from <float1> to <float2> normally random number of resources

syntax: '<str>:<int>:csv'

Will come from csv file at <str>. <str> can be an absolute path or a file in .../simulator/basefiles. <int> is the position in each row that holds the number of resources in the file. 0 is the first column.

csv files included are from wl1.csv to wl6.csv. wl1.csv starts at all 1 node jobs, wl2.csv is mostly 1 node jobs but resembles grizzly workloads in the past. wl3.csv is medium sized all the way up to wl6.csv which is the entire 1490 cluster on every job.

duration-time

The length of time each job will use to complete

syntax: '<float>:<exp|fixed>'

all jobs will have a fixed <float> amount of runtime or an exponentially random runtime with a <float> mean time.

syntax: '<float1>:<float2>:unif'

jobs will have from <float1> to <float2> uniformally random number of runtime

syntax: '<float1>:<float2>:norm'

jobs will have from <float1> to <float2> normally random number of runtime

syntax: '<str1>:<int>:<str2>:csv'

Will come from csv file at <str1>. <str1> can be an absolute path or a file in .../simulator/basefiles. <int> is the position in each row that holds the number of resources in the file. 0 is the first column.<str2> is the unit of time that this represents in the file, so 'h|m|s' for hours or minutes or seconds. 'h' should be used with the included files.

csv files included are from wl1.csv to wl6.csv. wl1.csv is all 24 hour jobs as their width is only 1 resource. wl2.csv is varied but resembles grizzly workloads in the past. wl3.csv is medium length all the way up to wl6.csv which is entirely 24 hour jobs.

submission-time

The time between submissions and randomness used. If set to 0:fixed, all jobs will submit at time zero.

syntax: '<float>:<exp|fixed>'

all jobs will have a fixed <float> amount of time between submissions or an exponentially random time with a <float> mean time between submissions.

syntax: '<float1>:<float2>:unif'

jobs will have from <float1> to <float2> uniformally random number of time between submissions

syntax: '<float1>:<float2>:norm'

jobs will have from <float1> to <float2> normally random number of time between submissions

Additional Options

wallclock-limit

the amount of time that a job is able to use. If omitted, will use -1, where the value will not be used in Batsim.

syntax: <float>|'<int>%' a percent will be based off of the runtime of the job.

syntax: <string> either 'min:max[:seed]' or 'min%:max%[:seed]' where min:max are floats and min% and max% are '<int>%'. These are random numbers from min to max and an optional seed

example: '98%:102%:10' from 98% of runtime to 102% of runtime with a seed of 10

read-time

The amount of time to read in from a simulated checkpoint if checkpointing is turned on. Follows the same syntax as wallclock-limit. Mandatory if using checkpointing, but can be set to 0.

dump-time

The amount of time to write out a simulated checkpoint if checkpointing is turned on. Follows the same syntax as wallclock-limit. Mandatory if using checkpointing, but can be set to 0.

checkpoint-interval

The amount of time between successive writes of a simulated checkpoint on a per job basis. Follows the same syntax as wallclock-limit. Not mandatory since a system-wide simulated checkpoint interval can be set.

resv

Sets what reservation definition to use. Only used if you are simulating reservations of time, and only used with conservative_bf algorithm.

force-creation

Workloads go in a database and will be re-used if they have the right characteristics. If you want to roll the dice again you should force the creation of a new workload.

seed

A seed that can be used on all randomness of the workload creation. Otherwise it will use time, making it random unless individual seed options are used.

index

Will set the index for a workload. Suppose you made a random workload and it was added to the database. You then wanted to run the experiment again but wanted a different roll of the dice for randomness, you could choose force-creation or just give it another index. The benefit of using an index is that you could come back to using the same workload as long as the other workload options remained the same.

Regular Options That Effect Workloads

submission-compression

will compress/expand the time between submission of jobs

syntax: '<int>%' . below 100% compresses, above 100% expands

reservations- and reservation-sweep

will define a reservation. If resv is set for the workload then this changes the workload.

workload-ids

This option piggy-backs off the index idea.

Jobs and Runs

If you want different options you make multiple jobs in the form of experiment_# folders.

If those options make batsim use randomness and you want to do some statistics by running batsim multiple times you use 'runs' by setting avg-makespan in the 'output' section of your config.

Ids

In contrast, if you want to make multiple random workloads for statistics, then you use 'ids' which can also be used in tandem with 'runs', though this gets complicated and may not aggregate properly at the time of this writing.TODO.

syntax: '[<comma seperated range of ids>]', example: '[1,5,8,20]' , yes this is a string

syntax: 'min;max;step', example: '5;20;1'

number-of-jobs

Although number-of-jobs in the workload section takes precedence, number-of-jobs can be set in the regular options as well. This is purely for the benefit of the jobs-sweep.

Options

All other available options are described here.
Required Options

batsched-policy

Sets which scheduling algorithm to use. Is mandatory.

options: fcfs_fast2 | easy_bf_fast2 | easy_bf_fast2_holdback | easy_bf2 | easy_bf3 | conservative_bf

algorithms discussed in User Docs

Options That Can Effect The Workload

submission-compression

will compress/expand the time between submission of jobs

syntax: '<int>%' . below 100% compresses, above 100% expands

reservations- and reservation-sweep

will define a reservation. If resv is set for the workload then this changes the workload. more info for these are located in the User Docs.

workload-ids

This option piggy-backs off the index idea.

Jobs and Runs

If you want different options you make multiple jobs in the form of experiment_# folders.

If those options make batsim use randomness and you want to do some statistics by running batsim multiple times you use 'runs' by setting avg-makespan in the 'output' section of your config.

Ids

In contrast, if you want to make multiple random workloads for statistics, then you use 'ids' which can also be used in tandem with 'runs', though this gets complicated and may not aggregate properly at the time of this writing.TODO.

syntax: '[<comma seperated range of ids>]', example: '[1,5,8,20]' , yes this is a string

syntax: 'min;max;step', example: '5;20;1'

number-of-jobs

Although number-of-jobs in the workload section takes precedence, number-of-jobs can be set in the regular options as well. This is purely for the benefit of the jobs-sweep.

Logging Options

KEEP IN MIND THESE CAN TAKE UP A LOT OF HARD DRIVE SPACE, not meant to be used on a large set of simulations

batsched-log

sets the logging for batsched

options: silent|debug|quiet|info|CCU_INFO|CCU_DEBUG|CCU_DEBUG_FIN|CCU_DEBUG_ALL

more info on these are in the User Docs

batsim-log

sets the logging for batsim

options: network-only|debug|quiet|CCU_INFO|CCU_DEBUG|CCU_DEBUG_FIN|CCU_DEBUG_ALL

more info on these are in the User Docs

log-b-log

if set to true will log B_LOG files ( these would need to be added to the scheduler code )

more info on these are in the Development Docs

output-svg

Whether to output the schedule with algorithms that use the schedule

options: none | all | short

'all' will output a svg every time an output_svg is encountered ( basically every time the schedule changes ). ONLY USE FOR SMALL WORKLOADS due to slow-down and Hard Drive space.

'short' will output a svg every time there is a short output_svg ( happens much less than 'all'). STILL ONLY USE FOR SMALLER WORKLOADS due to slow-down and Hard Drive space

output-svg-method

What method to output the schedule

options: svg | text | both

'svg' will output the svg files

'text' will only output the schedule in text form in the batsched-log which requires it to be on info or CCU_INFO

'both' does svg files and text in the log

svg-output-start

What output number to start at. If you know 'when' you want to concentrate on, in terms of how many svg's have been output, then set this number and possibly also the svg-output-end.

svg-output-end

What output number to end at. If you know 'when' you want to concentrate on, in terms of how many svg's have been output, then set this number and possibly also the svg-output-start.

svg-frame-start

What frame number to start at. A frame number is incremented each time make_decisions is entered.

svg-frame-end

What frame number to end at. A frame number is incremented each time make_decisions is entered.

svg-time-start

What simulated time to start outputting the schedule.

syntax: <float> , in seconds

svg-time-end

What simulated time to end outputting the schedule. -1.0 to go to the end of the simulation, the default.

syntax: <float> , in seconds

turn-off-extra-info

Extra info is output to a file called 'out_extra_info.csv'. It outputs a new line each time a job is completed. It consists of 'jobs completed','percent done','utilization', schedule metrics, 'utilization', and memory usage.

set to true to turn this off. Turning off will render progress.sh useless but may speed things up and will reduce Hard Drive space.

Failure Options

MTTR

Mean Time To Repair. Used in conjunction with failures to set how long a repair lasts. It will come up with random repair times each time a machine goes down based on an exponential distribution.

SMTBF

System Mean Time Between Failures. Used as the primary source of failures. It will come up with random failure times with an exponential distribution, and will come up with a random machine to have the failure on with a normal distribution.

calculate-checkpointing

If set to true, computes the optimal simulated checkpointing interval for each job based on read time and dump time and the failure rate

checkpoint-interval

Sets the system-wide simulated checkpoint interval

syntax: <float>

checkpointError

Used in conjunction with calculate-checkpointing. Will increase or decrease the computed optimal checkpoint by the factor given by checkpointError.

syntax: <float> , above 1.0 is an increase, below 1.0 is a decrease.

checkpointing-on

if set to true, will turn simulated checkpointing on. Mandatory to do simulated checkpointing.

fixed-failures

sets failures to be every simulated <float> seconds. Is very useful in debugging.

queue-policy

What the policy for the queue is when dealing with a re-submitted job. The options are: FCFS | ORIGINAL-FCFS

Usually the queue is FCFS based on the submit time. ORIGINAL-FCFS would put resubmitted jobs at the front of the queue based on their original submit time.

reject-jobs-after-nb-repairs

When failures result in machines going down because of a repair time on them, some jobs may not be able to run at all until machines become available. If there are only jobs in the queue that fall into this situation then a mode can be flipped to count how many times a repair is done before any job has executed. Once a job is able to execute, the count is reset. This setting waits <int> number of repairs being done before it gives up and rejects the jobs that are left. '-1' means the jobs will never be rejected in this situation, the default.

syntax: <int>

repair-time

Sets a system-wide repair time in seconds.

syntax: <float>

seed-failures

Will seed any random generators for failures, otherwise time is used.

syntax: <int>

seed-failure-machine

Will seed any random generators for determining which machine should get the failure, otherwise time is used.

syntax: <int>

seed-repair-times

Will seed any random generators for repair time, otherwise time is used

syntax: <int>

Real Checkpointing Options

checkpoint-batsim-interval

Will set an interval to do real checkpoints

syntax: <string>

"(real|simulated)[:once]:days-HH:MM:SS[:keep]"

'real' prepended will interpret the interval to be in real time

'simulated' prepended will interpret the interval to be in simulated time

optional :once will do one checkpoint and then stop doing any more checkpoints

optional :keep will set the amount of checkpoints to keep. checkpoint-batsim-keep trumps this

checkpoint-batsim-keep

How many checkpoints to keep

syntax: <int>

checkpoint-batsim-signal

The signal number to use for signal driven checkpointing.

syntax: <int> , You will want to either use SIGUSR1(10), SIGUSR2 (12), or preferably real-time signals from 35-64

Speed/Core Options

core-percent

Sets the limit on how many cores from a node can be used

syntax: <float>

core-count

Sets the amount of cores each node will have in the platform file and turns on '--enable-compute-sharing'

syntax: <int>

share-packing

If set to true, will pack single resource jobs onto one node until that node reaches core-percent * available cores

share-packing-holdback

If set to true, will holdback a certain number of nodes for exclusive share-packing

speeds

Will set the speed of the cluster in the platform file

syntax: <string> , flops per second

Where <string> is '<int>f'.

One can use size prefixes in front of 'f': K(10^3),M(10^6),G(10^9),T(10^12),P(10^15),E(10^18)

syntax: <string1>,<string2>,...

The difference here is that a list of strings is given, one for each pstate you use. pstates will be explained in both User and Developer Docs
ALL OTHER OPTIONS
copy
The amount of copies the ending workload will have, along with submission time optional options. This can be used to double up a workload when you double up the amount of nodes the cluster has. This operates at the Batsim level, and not during workload creation.
  'format: '<#copies>[:(+|-):#:(fixed|#:unif:(single|each-copy|all)[:<seed#>] ])'
  '    or  '<#copies>[:=:#(fixed|((exp|:#:unif)[:<seed#>]) ]'
  'So you can just do number of copies, or
  ''=':
  '   * you can copy and set the submission time of the copy as an exponential,uniform,or fixed amount with '=', or
  ''+|-':
  '   * you can add a submission time to add some jitter. This submission time is either added or subtracted with (+|-)
  '   * This time can be a fixed number followed by :fixed or uniform random number between 2 numbers
  '   * If random:
  '       * you need to specify the second number with :#:unif:
  '       * you need to specify:  'single','each-copy',or 'all'
  '       * 'single' random number, single random number for 'each-copy', or random number for 'all'
  '2 copies here means if there are 10 jobs to start with, there will be 20 total after the operation.
  ' Examples:
  '                       '2'    - 2 copies no alteration in submission times
  '             '2:=:100:exp'    - 2 copies with 1 having original submission times, 1 having exponential random with a mean rate of 100 seconds.
  '             '2:=:0:fixed'    - 2 copies with 1 having original submission times, 1 having fixed time of 0
  '       '2:=:20:40:unif:30'    - 2 copies with 1 having original submission times, 1 having uniform random between 20 and 40 seconds. Use 30 as seed.
  '            '2:+:10:fixed'    - 2 copies, add 10 seconds fixed jitter to submission times
  '            '2:-:10:fixed'    - 2 copies, subtract 10 seconds fixed jitter from submission times
  '    '2:+:5:10:unif:single'    - 2 copies, get one random number between 5 and 10 and add it to all copied submission times
  '    '3:+:5:10:unif:all:20'    - 3 copies, get random numbers between 5 and 10 for all jobs of all copies, add it to submission times
  '                                  and seed the random generator with 20
  ' '3:+:5:10:unif:each-copy'    - 3 copies, get one random number between 5 and 10 and add it to all submission times of first copy
  '                                  then get another random number between 5 and 10 and add it to all sub times of second copy
submission-time-after
This dictates the time between submissions and what kind of randomness. It happens AFTER the copy operation and after sorting the jobs based on submission time. This operates at the Batsim level, and not during workload creation.
'format: '<#:(fixed[:#])|(exp|#:unif)[:(#|s[:#]])'
'   or   'shuffle[:#]'
'It is applied after sorting the current workload by submit time and after applying the copy option
'If zero is used for a float,combined with ":fixed" then all jobs will start at time zero.
'If omitted, the original submission times will be used, be that grizzly produced or synthetically produced
'exp:    This will be exponentially distributed, random values with mean time between submissions to be FLOAT.
'fixed:  All jobs will have this time between them unless zero is used for a FLOAT.
'unif:   This will be uniform, random values from min:max
's:      Used after the random types (exp|fixed|unif) to specify you want the job's submit times shuffled after.
'shuffle: Will simply shuffle around the submit times amongst the jobs.
'a seed can be put on the end of the string to use for deterministic behavior
'ex:
'       '--submission-time-after "200.0:exp:s"'
'       '--submission-time-after "100.0:fixed"'
'       '--submission-time-after "0.0:fixed"'
'       '--submission-time-after "0:200.0:unif"'
'       '--submission-time-after "200.0:exp:10"'  <-- 10 is the seed
'       '--submission-time-after "0:200.0:unif:20"' <-- 20 is the seed
'       '--submission-time-after "shuffle:20" <-- 20 is the seed
submission-time-before

This is the same as submission-time-after except it happens BEFORE the copy operation and before sorting the jobs based on submission time. Both submission-time-before and submission-time-after can be used or either can be used on their own.

performance-factor

Will increase/decrease the length of all jobs by this factor (floating point). This operates at the Batsim level and not during workload creation.

syntax: <float> , above 1.0 will increase, below 1.0 will decrease

queue-depth

The amount of items in the queue that will be scheduled

only used in conservative_bf

A lower amount will improve performance of the scheduler and thus the simulation but changes scheduling decisions and, so, gives different results

(-1) sets it to all items being scheduled, the default
reservations-start
Meant for monte-carlo with reservations, staggering their start time.
syntax: <string>
<string> is string in following format:
'<order#>:<-|+><#seconds>'
where order# is the order (starting at 0) in the reservation array as described in your config file
where you (must) choose -(negative,behind) or +(positive,ahead)
where you specify the amount of seconds forward or backward
'example_1: --reservations-start '0:+5'
start the reservations with order# 0, 5 seconds ahead
'example_2: --reservations-start '1:-2000'
start the reservations with order# 1, 2000 seconds behind
'example_3: --reservations-start '0:+5 , 1:-2000'
only one invocation of this flag is allowed but values for different
order #s can be acheived with a comma. spaces are allowed for easier viewing.
test-suite

If set to true, will assume the folder structure has an umbrella folder to it, where multiple configs were being used and so multiple base folders are used under the umbrella folder.

This affects where the "current_progress.log" file is kept.

This file keeps track of which simulations are finished and which successfully output a post_out_jobs.csv file. This helps the test-suite determine what simulations have finished and whether to go on to the next step or not.

If an umbrella folder is used then "current_progress.log" is located one folder up from its base folder. Otherwise it is located in its base folder.

Run Batsim - Crash Course To myBatchTasks.sh

In this crash course you will learn the very basics of myBatchTasks.sh - the script to turn your config file into running simulations.

Topics include:

Batsim Environment
myBatchTasks.sh
Squeue Monitoring

Batsim Environment - batsim_environment.sh

You always want to make sure you get into your batsim environment first.
To get into your batsim environment:
cd /path/to/simulator/basefiles
# make sure prefix is set in batsim_environment.sh
source batsim_environment.sh
Once you are in your batsim environment you have a few tools to use:

batEnv

Tells you what batsim environment you are in (prefix). This is helpful if you have multiple deployments.

batVersion

Tells you what version of simulator you are using. If one has problems it would be helpful to include:

batsim version

batsched version

batVersion

batExit

gets you out of the batsim environment.

changes your:

PATH - removes some added paths

LD_LIBRARY_PATH - removes some added paths

deactivates your python environment

removes the (batsim_env) from your prompt

batFile

makes it easier to select a file to pass to myBatchTasks.sh

displays your configs directory and allows you to choose the numbered config file to set as $file1 .

also helps you select a folder.

use batFile --help for full usage.

batFolder

makes it easier to select a folder.

use batFolder --help for full usage.

bind_all

will bind certain keys to certain functions while inside the command-line terminal.

very helpful bindings for the keyboard. For instance: type cd then continue to press alt+y and you will see the history of just your cd command.

use bind-all --help to view all bindings that are made.

basefiles scripts

myBatchTasks.sh

the main script you will use.

use myBatchTasks.sh --help to view the full usage.

progress.sh

a very helpful script to view the progress of running simulations.

use progress.sh --help to view the full usage.

aggregate_makespan.py

will aggregate results after simulations are finished.

use aggregate_makespan.py --help to view the full usage.
myBatchTasks.sh
You run our simulations using a script called myBatchTasks.sh
For help:
myBatchTasks.sh --help
File and Output Folder

The most important info to give it is the config file and the output folder

If you provide just the name of the config file or just the name of the output folder, it will assume you are using the default 'configs' folder and the default 'experiments' folder respectively.

You may not have space on these locations (particularly the output folder) so you can pass absolute paths to these locations.

With the output folder Make Sure:

if using default locations (no slashes), that that folder does not exist in simulator/experiments/

if using absolute locations, that the leaf of the output folder does not exist

Tasks Per Node

We used this property to limit how many simulations would run on a node and thus limit its memory usage

You will also want to use it to limit simulations to less than or equal to the amount of cores on your nodes

Method

Very important, this says how you deployed batsim.

default is bare-metal

Parallel-Method

sets the type of parallel method.

I suggest keeping this as 'tasks', the default.

Socket-Start

Batsim uses sockets to communicate with its sister program 'batsched'

You need to use a different socket for each simulation

If you only run myBatchTasks.sh once and you leave it till all jobs complete you have nothing to worry about

If you spin up some more simulations after myBatchTasks.sh returns control to the user you will need to figure how many simulations you currently have running

The paper uses 611 simulations. If you are running the paper.config and want to spin up more simulations of something else, then add like 1,000 to the socket-start

So your socket-start would then be 11000

You must do your own book-keeping of sockets used

WallClock-Limit

Self explanatory in the output of --help
Squeue Monitoring
We use a certain format passed to squeue to see which simulations are still running.
It is advised you do the same. Add the following to your .bashrc :
function squeue ()
{
    if [[ $1 == "-s" ]]
    then
        /usr/bin/squeue --format="%.18i %.9P %.8u %.10M %.9l %.9N %.120j" "$@"
    else
        /usr/bin/squeue --format="%.18i %.9P %.8j %.8u %.8T %.10M %.9l %.6D %R %.120k" "$@"
    fi
}
To see the 'sbatch jobs' use squeue
To see the 'srun tasks' use squeue -s

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basefiles		basefiles
.gitignore		.gitignore
README.md		README.md
update_simulator.sh		update_simulator.sh

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Table of Contents

Deployment

Requirements

Deploy Methods

Deploy: How To...

Bare-Metal

Docker

CharlieCloud with Internet

CharlieCloud without Internet

Make Sure Everything Works

Bare-Metal works

Docker works

CharlieCloud works

How To Make a Config File - Crash Course

Basic Outline

Sweeps

Explanation of Sweeps

Types of Sweep Functions

Current Sweeps Available - (Functions Allowed)

Workloads

grizzly-workload

Required Options

Additional Options

Regular Options That Effect Workloads

synthetic-workload

Required Options

Additional Options

Regular Options That Effect Workloads

Options

Required Options

Options That Can Effect The Workload

Logging Options

Failure Options

Real Checkpointing Options

Speed/Core Options

ALL OTHER OPTIONS

Run Batsim - Crash Course To myBatchTasks.sh

Batsim Environment - batsim_environment.sh

myBatchTasks.sh

File and Output Folder

Tasks Per Node

Method

Parallel-Method

Socket-Start

WallClock-Limit

Squeue Monitoring

Further Reading

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