This repository contains multiple independent modules to execute advanced single cell analysis. Modules are mostly in form of tutorials. You can refer to the repository's webpage to see all the modules we have created. The repository will be populate over time with both examples in the R and python programming languages, with some eventual additions of the bash command line. This repository contains also the environments to recreate locally the modules and a Docker container to export the material to other computing clusters.
For each module, the related data is downloadable from the Zenodo repository shown in the webpage.
If you publish a paper or present a project where you have used our material:
- cite the data (with the Zenodo DOI and also the eventual publication presenting the data)
- cite this repository (with the Zenodo DOI ???)
- acknowledge the Novo Nordisk Foundation grant *Danish halth data science sandbox, Grant Number NNF20OC0063268 *