This is a class designed to be run as a protocol with RatCatcher.
It converts raw data from Plexon (.plx
) neurophysiology data files into MATLAB matrices,
and provides an interface to the KiloSort2 cluster-cutting software.
You can use the plx2mat
function to convert from Plexon files to MATLAB matrices.
The convert
function scales matrices and converts to a KiloSort
-readable format.
Spike sorting is done through RatCatcher
. Instantiate a RatCatcher
object,
and use the 'KiloPlex'
protocol. See the setup
script for an example.
Looking for Kilosort 1? Look here: https://github.com/hasselmonians/KiloPlex/tree/KiloSort1