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scalar reconfigure: help users remove buggy repos
When running 'scalar reconfigure -a', Scalar has warning messages about the repository missing (or not containing a .git directory). Failures can also happen while trying to modify the repository-local config for that repository. These warnings may seem confusing to users who don't understand what they mean or how to stop them. Add a warning that instructs the user how to remove the warning in future installations. Signed-off-by: Derrick Stolee <derrickstolee@github.com>
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