Update CITING.md with new papers

CITING.md

@@ -1,8 +1,6 @@
 # Citing Ginkgo                                           {#citing_ginkgo}
 
-The main Ginkgo paper describing Ginkgo's purpose, design and interface is
-available through the following reference:
-
+The main Ginkgo interface design, performance paper is
 ``` bibtex
 @article{ginkgo-toms-2022,
 title = {{Ginkgo: A Modern Linear Operator Algebra Framework for High Performance Computing}},
@@ -23,16 +21,11 @@ pages = {2:1--2:33}
 }
 ```
 
-Multiple topical papers exist on Ginkgo and its algorithms. The following papers
-can be used to cite specific aspects of the Ginkgo project.
-
-### The Ginkgo Software
-
-The Ginkgo software itself was reviewed and has a paper published in the Journal
-of Open Source Software, which can be cited with the following reference:
+and the software itself has been reviewed and published in Journal of Open Source Software (JOSS).
 
 ```bibtex
-@article{GinkgoJoss2020,
+
+@article{ginkgo-joss-2020,
   doi = {10.21105/joss.02260},
   url = {https://doi.org/10.21105/joss.02260},
   year = {2020},
@@ -43,22 +36,57 @@ of Open Source Software, which can be cited with the following reference:
   author = {Hartwig Anzt and Terry Cojean and Yen-Chen Chen and Goran Flegar and Fritz G\"{o}bel and Thomas Gr\"{u}tzmacher and Pratik Nayak and Tobias Ribizel and Yu-Hsiang Tsai},
   title = {Ginkgo: A high performance numerical linear algebra library},
   journal = {Journal of Open Source Software}
-}
+
 ```
 
+For topical publications, please cite whichever features you use within Ginkgo:
+
+**[Portability](#on-portability)** |
+**[Software Sustainability](#on-software-sustainability)** |
+**[SpMV performance](#spmv-performance)** |
+**[Preconditioners](#preconditioners)** |
+**[Mixed-precision](#mixed-precision-algorithms)** |
+**[Sparse direct](#sparse-factorizations-and-direct-solvers)** |
+**[Batched](#batched-algorithms)**
+
+
 ### On Portability
 
 ``` bibtex
-@misc{tsai2020amdportability,
-    title={Preparing Ginkgo for AMD GPUs -- A Testimonial on Porting CUDA Code to HIP},
-    author={Yuhsiang M. Tsai and Terry Cojean and Tobias Ribizel and Hartwig Anzt},
-    year={2020},
-    eprint={2006.14290},
-    archivePrefix={arXiv},
-    primaryClass={cs.MS}
+@inproceedings{tsaiPreparingGinkgoAMD2021,
+  title = {Preparing {{Ginkgo}} for {{AMD GPUs}} {\textendash} {{A Testimonial}} on {{Porting CUDA Code}} to {{HIP}}},
+  booktitle = {Euro-{{Par}} 2020: {{Parallel Processing Workshops}}},
+  author = {Tsai, Yuhsiang M. and Cojean, Terry and Ribizel, Tobias and Anzt, Hartwig},
+  editor = {Balis, Bartosz and B. Heras, Dora and Antonelli, Laura and Bracciali, Andrea and Gruber, Thomas and {Hyun-Wook}, Jin and Kuhn, Michael and Scott, Stephen L. and Unat, Didem and Wyrzykowski, Roman},
+  year = {2021},
+  series = {Lecture {{Notes}} in {{Computer Science}}},
+  pages = {109--121},
+  publisher = {{Springer International Publishing}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-030-71593-9_9},
+  isbn = {978-3-030-71593-9},
+  langid = {english},
+  keywords = {CUDA,GPU,HIP,Portability}
+}
+
+@inproceedings{tsaiPortingSparseLinear2022,
+  title = {Porting {{Sparse Linear Algebra}} to~{{Intel GPUs}}},
+  booktitle = {Euro-{{Par}} 2021: {{Parallel Processing Workshops}}},
+  author = {Tsai, Yuhsiang M. and Cojean, Terry and Anzt, Hartwig},
+  editor = {Chaves, Ricardo and B. Heras, Dora and Ilic, Aleksandar and Unat, Didem and Badia, Rosa M. and Bracciali, Andrea and Diehl, Patrick and Dubey, Anshu and Sangyoon, Oh and L. Scott, Stephen and Ricci, Laura},
+  year = {2022},
+  series = {Lecture {{Notes}} in {{Computer Science}}},
+  pages = {57--68},
+  publisher = {{Springer International Publishing}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-031-06156-1_5},
+  isbn = {978-3-031-06156-1},
+  langid = {english},
+  keywords = {Ginkgo,Intel GPUs,Math library,oneAPI,SpMV}
 }
 ```
 
+
 ### On Software Sustainability
 
 ``` bibtex
@@ -80,7 +108,8 @@ series = {PASC ’19}
 }
 ```
 
-### On SpMV or solvers performance
+
+### SpMV performance
 
 ``` bibtex
 @InProceedings{tsai2020amdspmv,
@@ -119,15 +148,217 @@ articleno = {2},
 numpages = {26},
 keywords = {irregular matrices, GPUs, Sparse Matrix Vector Product (SpMV)}
 }
+
+@inproceedings{anztEvaluatingPerformanceNVIDIA2020,
+  title = {Evaluating the {{Performance}} of {{NVIDIA}}'s {{A100 Ampere GPU}} for {{Sparse}} and {{Batched Computations}}},
+  booktitle = {2020 {{IEEE}}/{{ACM Performance Modeling}}, {{Benchmarking}} and {{Simulation}} of {{High Performance Computer Systems}} ({{PMBS}})},
+  author = {Anzt, Hartwig and Tsai, Yuhsiang M. and Abdelfattah, Ahmad and Cojean, Terry and Dongarra, Jack},
+  year = {2020},
+  month = nov,
+  pages = {26--38},
+  doi = {10.1109/PMBS51919.2020.00009},
+  urldate = {2023-12-06},
+  keywords = {ginkgo}
+}
+```
+
+
+### Preconditioners
+
+```bibtex
+@inproceedings{gobelMixedPrecisionIncomplete2021,
+  title = {Mixed {{Precision Incomplete}} and {{Factorized Sparse Approximate Inverse Preconditioning}} on {{GPUs}}},
+  booktitle = {Euro-{{Par}} 2021: {{Parallel Processing}}},
+  author = {G{\"o}bel, Fritz and Gr{\"u}tzmacher, Thomas and Ribizel, Tobias and Anzt, Hartwig},
+  editor = {Sousa, Leonel and Roma, Nuno and Tom{\'a}s, Pedro},
+  year = {2021},
+  series = {Lecture {{Notes}} in {{Computer Science}}},
+  pages = {550--564},
+  publisher = {{Springer International Publishing}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-030-85665-6_34},
+  isbn = {978-3-030-85665-6},
+  langid = {english},
+  keywords = {Factorized Sparse Approximate Inverse,GPUs,Incomplete Sparse Approximate Inverse,Mixed precision,Preconditioning}
+}
+
+@article{flegarAdaptivePrecisionBlockJacobi2021,
+  title = {Adaptive {{Precision Block-Jacobi}} for {{High Performance Preconditioning}} in the {{Ginkgo Linear Algebra Software}}},
+  author = {Flegar, Goran and Anzt, Hartwig and Cojean, Terry and {Quintana-Ort{\'i}}, Enrique S.},
+  year = {2021},
+  month = apr,
+  journal = {ACM Transactions on Mathematical Software},
+  volume = {47},
+  number = {2},
+  pages = {14:1--14:28},
+  issn = {0098-3500},
+  doi = {10.1145/3441850},
+  urldate = {2023-08-08},
+  keywords = {adaptive precision,block-Jacobi,GPU,Krylov solvers,preconditioning,Sparse linear algebra}
+}
+```
+
+
+### Mixed-precision algorithms
+
+```bibtex
+@article{tsaiThreeprecisionAlgebraicMultigrid2023,
+  title = {Three-Precision Algebraic Multigrid on {{GPUs}}},
+  author = {Tsai, Yu-Hsiang Mike and Beams, Natalie and Anzt, Hartwig},
+  year = {2023},
+  month = dec,
+  journal = {Future Generation Computer Systems},
+  volume = {149},
+  pages = {280--293},
+  issn = {0167-739X},
+  doi = {10.1016/j.future.2023.07.024},
+  urldate = {2023-12-13},
+  keywords = {Algebraic multigrid,GPUs,Mixed precision,Portability}
+}
+
+@article{aliagaCompressedBasisGMRES2022,
+  title = {Compressed Basis {{GMRES}} on High-Performance Graphics Processing Units},
+  author = {Aliaga, Jos{\'e} I and Anzt, Hartwig and Gr{\"u}tzmacher, Thomas and {Quintana-Ort{\'i}}, Enrique S and Tom{\'a}s, Andr{\'e}s E},
+  year = {2022},
+  month = aug,
+  journal = {The International Journal of High Performance Computing Applications},
+  pages = {10943420221115140},
+  publisher = {{SAGE Publications Ltd STM}},
+  issn = {1094-3420},
+  doi = {10.1177/10943420221115140},
+  urldate = {2023-08-06},
+  langid = {english}
+}
+
+@inproceedings{aliagaBalancedCompressedCoordinate2021,
+  title = {Balanced and {{Compressed Coordinate Layout}} for the {{Sparse Matrix-Vector Product}} on {{GPUs}}},
+  booktitle = {Euro-{{Par}} 2020: {{Parallel Processing Workshops}}},
+  author = {Aliaga, Jos{\'e} Ignacio and Anzt, Hartwig and {Quintana-Ort{\'i}}, Enrique S. and Tom{\'a}s, Andr{\'e}s E. and Tsai, Yuhsiang M.},
+  editor = {Balis, Bartosz and B. Heras, Dora and Antonelli, Laura and Bracciali, Andrea and Gruber, Thomas and {Hyun-Wook}, Jin and Kuhn, Michael and Scott, Stephen L. and Unat, Didem and Wyrzykowski, Roman},
+  year = {2021},
+  series = {Lecture {{Notes}} in {{Computer Science}}},
+  pages = {83--95},
+  publisher = {{Springer International Publishing}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-030-71593-9_7},
+  isbn = {978-3-030-71593-9},
+  langid = {english},
+  keywords = {GPUs,High performance computing,Sparse linear algebra,Sparse matrix data layouts,Sparse matrix-vector product,spmv}
+}
+
+@article{grutzmacherUsingGinkgoMemory2023,
+  title = {Using {{Ginkgo}}'s Memory Accessor for Improving the Accuracy of Memory-Bound Low Precision {{BLAS}}},
+  author = {Gr{\"u}tzmacher, Thomas and Anzt, Hartwig and {Quintana-Ort{\'i}}, Enrique S.},
+  year = {2023},
+  journal = {Software: Practice and Experience},
+  volume = {53},
+  number = {1},
+  pages = {81--98},
+  issn = {1097-024X},
+  doi = {10.1002/spe.3041},
+  urldate = {2023-08-06},
+  copyright = {{\textcopyright} 2021 The Authors. Software: Practice and Experience published by John Wiley \& Sons Ltd.},
+  langid = {english},
+  keywords = {accessor,floating-point formats,high performance,memory-bound algorithms,mixed precision,roofline model}
+}
+```
+
+
+### Sparse factorizations and direct solvers
+
+```bibtex
+@inproceedings{ribizelParallelSymbolicCholesky2023,
+  title = {Parallel {{Symbolic Cholesky Factorization}}},
+  booktitle = {Proceedings of the {{SC}} '23 {{Workshops}} of {{The International Conference}} on {{High Performance Computing}}, {{Network}}, {{Storage}}, and {{Analysis}}},
+  author = {Ribizel, Tobias and Anzt, Hartwig},
+  year = {2023},
+  month = nov,
+  series = {{{SC-W}} '23},
+  pages = {1721--1727},
+  publisher = {{Association for Computing Machinery}},
+  address = {{New York, NY, USA}},
+  doi = {10.1145/3624062.3624253},
+  urldate = {2023-11-12},
+  isbn = {9798400707858},
+  keywords = {elimination tree,GPGPU,sparse factorization,symbolic factorization}
+}
+
+@misc{swirydowiczGPUResidentSparseDirect2023,
+  title = {{{GPU-Resident Sparse Direct Linear Solvers}} for {{Alternating Current Optimal Power Flow Analysis}}},
+  author = {{\'S}wirydowicz, Kasia and Koukpaizan, Nicholson and Ribizel, Tobias and G{\"o}bel, Fritz and Abhyankar, Shrirang and Anzt, Hartwig and Pele{\v s}, Slaven},
+  year = {2023},
+  month = aug,
+  number = {arXiv:2306.14337},
+  eprint = {2306.14337},
+  primaryclass = {cs},
+  publisher = {{arXiv}},
+  doi = {10.48550/arXiv.2306.14337},
+  urldate = {2023-11-08},
+  archiveprefix = {arxiv},
+  keywords = {{65F05, 65F10, 65F50, 65K10, 65Y05, 65Y10, 90C51},{Computer Science - Computational Engineering, Finance, and Science},ginkgo}
+}
 ```
 
+
+### Batched algorithms
+
 ```bibtex
-@misc{tsai2020evaluating,
-    title={Evaluating the Performance of NVIDIA's A100 Ampere GPU for Sparse Linear Algebra Computations},
-    author={Yuhsiang Mike Tsai and Terry Cojean and Hartwig Anzt},
-    year={2020},
-    eprint={2008.08478},
-    archivePrefix={arXiv},
-    primaryClass={cs.MS}
+@inproceedings{aggarwalBatchedSparseIterative2021,
+  title = {Batched {{Sparse Iterative Solvers}} for {{Computational Chemistry Simulations}} on {{GPUs}}},
+  booktitle = {2021 12th {{Workshop}} on {{Latest Advances}} in {{Scalable Algorithms}} for {{Large-Scale Systems}} ({{ScalA}})},
+  author = {Aggarwal, Isha and Kashi, Aditya and Nayak, Pratik and Balos, Cody J. and Woodward, Carol S. and Anzt, Hartwig},
+  year = {2021},
+  month = nov,
+  pages = {35--43},
+  doi = {10/gn3xcg},
+  copyright = {All rights reserved},
+  keywords = {batched solvers,Chemistry,Computational modeling,Computer architecture,Conferences,Ginkgo,GPU,Graphics processing units,Mathematical models,Sparse linear systems}
+}
+
+@inproceedings{aggarwalPreconditionersBatchedIterative2022,
+  title = {Preconditioners for~{{Batched Iterative Linear Solvers}} on~{{GPUs}}},
+  booktitle = {Accelerating {{Science}} and {{Engineering Discoveries Through Integrated Research Infrastructure}} for {{Experiment}}, {{Big Data}}, {{Modeling}} and {{Simulation}}},
+  author = {Aggarwal, Isha and Nayak, Pratik and Kashi, Aditya and Anzt, Hartwig},
+  editor = {Doug, Kothe and Al, Geist and Pophale, Swaroop and Liu, Hong and {Parete-Koon}, Suzanne},
+  year = {2022},
+  series = {Communications in {{Computer}} and {{Information Science}}},
+  pages = {38--53},
+  publisher = {{Springer Nature Switzerland}},
+  address = {{Cham}},
+  doi = {10.1007/978-3-031-23606-8_3},
+  copyright = {All rights reserved},
+  isbn = {978-3-031-23606-8},
+  langid = {english},
+  keywords = {Batched preconditioners,Batched solvers,GINKGO,GPU,Sparse linear systems}
+}
+
+@inproceedings{kashiBatchedSparseIterative2022,
+  title = {Batched Sparse Iterative Solvers on {{GPU}} for the Collision Operator for Fusion Plasma Simulations},
+  booktitle = {2022 {{IEEE International Parallel}} and {{Distributed Processing Symposium}} ({{IPDPS}})},
+  author = {Kashi, Aditya and Nayak, Pratik and Kulkarni, Dhruva and Scheinberg, Aaron and Lin, Paul and Anzt, Hartwig},
+  year = {2022},
+  month = may,
+  pages = {157--167},
+  issn = {1530-2075},
+  doi = {10.1109/IPDPS53621.2022.00024},
+  copyright = {All rights reserved},
+  keywords = {batched solvers,fusion,Ginkgo,GPU,Graphics processing units,Iter,Iterative methods,performance portability,Plasma simulation,Production,Programming,simulation,Software architecture,Sparse linear systems,WDMApp,Xgc}
+}
+
+@inproceedings{nguyenPortingBatchedIterative2023,
+  title = {Porting {{Batched Iterative Solvers}} onto {{Intel GPUs}} with {{SYCL}}},
+  booktitle = {Proceedings of the {{SC}} '23 {{Workshops}} of {{The International Conference}} on {{High Performance Computing}}, {{Network}}, {{Storage}}, and {{Analysis}}},
+  author = {Nguyen, Phuong and Nayak, Pratik and Anzt, Hartwig},
+  year = {2023},
+  month = nov,
+  series = {{{SC-W}} '23},
+  pages = {1048--1058},
+  publisher = {{Association for Computing Machinery}},
+  address = {{New York, NY, USA}},
+  doi = {10.1145/3624062.3624181},
+  urldate = {2023-11-11},
+  copyright = {All rights reserved},
+  isbn = {9798400707858},
+  keywords = {Batched Linear Solvers,Intel GPUs,Performance Portability,SYCL}
 }
 ```