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  1. castools castools Public

    Forked from barakcohenlab/castools

    Command line tool for the CAS project

    Jupyter Notebook

  2. regtools regtools Public

    Forked from griffithlab/regtools

    Tools that integrate DNA-seq and RNA-seq data to help identify mutations that have a regulatory effect.

    C++

  3. maury maury Public

    An R package to detect sample-swaps in Next Generation Sequencing(NGS) data.

    R 2

  4. arnav arnav Public

    Mutation calling using a site-specific binomial model

    C 1

  5. bam-parser-tutorial bam-parser-tutorial Public

    A simple example of parsing BAM files using htslib

    C 12 2

  6. mpileup2readcounts mpileup2readcounts Public

    Get per-nucleotide readcounts from samtools mpileup

    C++ 4 6