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@gandallab

Gandal Lab

Systems biology and genomics for brain disorders

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  1. devBrain_xQTL devBrain_xQTL Public

    Jupyter Notebook 7 1

  2. Dev_Brain_IsoSeq Dev_Brain_IsoSeq Public

    Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain

    HTML 7 2

  3. C4A-network C4A-network Public

    Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

    R 4 1

  4. BrainSpan-trajectory BrainSpan-trajectory Public

    Code that downloads, munges, and plots developmental gene expression data from BrainSpan

    Jupyter Notebook 4 2

  5. ASD_STG_LCM_RNAseq ASD_STG_LCM_RNAseq Public

    RNA-seq of laser captured neuron and oligos in ASD superior temporal gyrus

    R 3

  6. NHP_MIA_RNAseq NHP_MIA_RNAseq Public

    Code and documentation for NHP_MIA_RNAseq project

    Shell 1

Repositories

Showing 10 of 12 repositories
  • gandallab/devBrain_xQTL’s past year of commit activity
    Jupyter Notebook 7 1 0 0 Updated Aug 30, 2024
  • Dev_Brain_IsoSeq Public

    Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain

    gandallab/Dev_Brain_IsoSeq’s past year of commit activity
    HTML 7 2 1 0 Updated May 30, 2024
  • wf-single-cell Public Forked from epi2me-labs/wf-single-cell

    Oxford Nanopore's single cell pipeline (successor to Sockeye) with enhancements for our cluster

    gandallab/wf-single-cell’s past year of commit activity
    Python 0 37 0 0 Updated Feb 9, 2024
  • brain_CTP_deconv Public

    Deconvolving brain cell-types from DNA methylation data

    gandallab/brain_CTP_deconv’s past year of commit activity
    HTML 1 0 0 0 Updated Feb 6, 2024
  • gandallab/ipsych_xdx_finemap’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 30, 2024
  • ASD_STG_LCM_RNAseq Public

    RNA-seq of laser captured neuron and oligos in ASD superior temporal gyrus

    gandallab/ASD_STG_LCM_RNAseq’s past year of commit activity
    R 3 0 0 0 Updated Aug 21, 2023
  • gene-list Public Forked from mmkim1210/gene-list

    📚List of curated gene sets for enrichment analyses

    gandallab/gene-list’s past year of commit activity
    1 1 3 0 Updated May 12, 2023
  • C4A-network Public

    Code accompanying the manuscript "Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia"

    gandallab/C4A-network’s past year of commit activity
    R 4 1 0 0 Updated Jan 13, 2023
  • h2-snakemake-experimental Public Forked from Snakemake-Profiles/sge

    Snakemake profile for Hoffman2

    gandallab/h2-snakemake-experimental’s past year of commit activity
    Python 0 10 0 0 Updated May 3, 2022
  • GENCODE-EDA Public

    Exploratory data analysis for GENCODE annotation in Julia or R

    gandallab/GENCODE-EDA’s past year of commit activity
    Julia 0 0 1 0 Updated Jan 28, 2022

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