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@fmi-faim

FAIM

Facility for Advanced Imaging and Microscopy at FMI Basel

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  1. fmi-ij2-plugins fmi-ij2-plugins Public

    A collection of ImageJ2 plugins for use with KNIME

    Java 7 3

  2. visiview-scripts visiview-scripts Public

    A collection of macros for the VisiView acquisition software

    Python 1 1

  3. imagej-scripts imagej-scripts Public

    Python 1

Repositories

Showing 10 of 49 repositories
  • staged-recipes Public Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    fmi-faim/staged-recipes’s past year of commit activity
    Python 0 BSD-3-Clause 4,809 0 0 Updated Aug 8, 2024
  • ipa-project-template Public

    Copier template for image processing & analysis projects.

    fmi-faim/ipa-project-template’s past year of commit activity
    Jinja 3 MIT 2 7 1 Updated Aug 8, 2024
  • faim-ipa Public

    A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)

    fmi-faim/faim-ipa’s past year of commit activity
    Python 7 BSD-3-Clause 6 21 2 Updated Aug 7, 2024
  • napari-save-transformed Public

    Save image layers with their transformation applied

    fmi-faim/napari-save-transformed’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 0 Updated Aug 7, 2024
  • eicm Public

    Functions to estimate illumination correction matrices from reference illumination samples.

    fmi-faim/eicm’s past year of commit activity
    Python 1 1 2 1 Updated Aug 5, 2024
  • faim-wako-searchfirst Public

    Python scripts for the SearchFirst option in Wako Software Suite

    fmi-faim/faim-wako-searchfirst’s past year of commit activity
    Python 1 MIT 0 8 4 Updated Aug 5, 2024
  • mobiedantic Public

    Pydantic models for MoBIE projects and datasets

    fmi-faim/mobiedantic’s past year of commit activity
    Python 0 BSD-3-Clause 0 5 0 Updated Jul 24, 2024
  • fmi-trackmate-addons Public

    Addons for TrackMate in ImageJ

    fmi-faim/fmi-trackmate-addons’s past year of commit activity
    Java 0 GPL-3.0 2 1 0 Updated Jul 10, 2024
  • cluster_tools Public Forked from constantinpape/cluster_tools

    Distributed segmentation for bio-image-analysis

    fmi-faim/cluster_tools’s past year of commit activity
    Python 0 MIT 14 0 0 Updated Jul 8, 2024
  • prefect-workflows Public

    A collection of Prefect workflows.

    fmi-faim/prefect-workflows’s past year of commit activity
    Python 0 BSD-3-Clause 0 6 0 Updated Jul 8, 2024
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