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RSeQC #51

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4 of 7 tasks
ewels opened this issue Apr 1, 2015 · 2 comments
Open
4 of 7 tasks

RSeQC #51

ewels opened this issue Apr 1, 2015 · 2 comments
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ewels commented Apr 1, 2015

Module for RSeQC perhaps?

Edit: This probably isn't a single module, rather a group of several:
@ewels ewels added the modules label Apr 1, 2015
@ewels ewels modified the milestone: Version 0.4 Apr 22, 2015
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ewels commented Apr 24, 2015

RSeQC needs yet another reference type: a 12-column tab separated, BED plain text file to represent gene models.

Example here and some downloads here

ewels added a commit that referenced this issue May 13, 2015
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Added 'rseqc_inner_distance' module for #51
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ewels commented May 13, 2015

Script to convert gtf to BED12 here:
https://code.google.com/p/ea-utils/source/browse/trunk/clipper/gtf2bed

@ewels ewels modified the milestones: Version 0.4, Version 0.5 Nov 5, 2015
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