AutoTerm

batch_preprocess_images

code for batch preprocessing images including cropping, histogram normalization, upsample, remove partial images

batch_inference_termini

code for batch predicting terminus position and post process, including truncating, screening, and plotting

data_processing

utility codes will be used in other scripts

pytorch-deeplab-xception

the deep learning code

MC dropout

code for conducting MC dropout and calculate related uncertainties.

merge_shp

code for merge individual terminus traces into a single shapefile

GEE

code for automating data collection

the directory in the code need to be changed before using