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EcoHealth Alliance

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  1. HP3 HP3 Public

    Repository for Host-Pathogen Phylogeny Project. Paper DOI: 10.1038/nature22975

    HTML 14 6

  2. fasterize fasterize Public

    High performance raster conversion for modern spatial data 🚀🌏▦

    C++ 181 15

  3. diagnostic-dashboard diagnostic-dashboard Public

    GRITS uses natural language processing to extract disease-related information from text, including disease names, symptoms, dates, locations, case and death counts, and more.

    JavaScript 5

  4. flirt flirt Public

    FLIRT uses airline flight schedule data to map the commercial flight network. It shows direct flights from a selected location, and can simulate passengers taking multi-leg itineraries.

    JavaScript 6

  5. eidr-connect eidr-connect Public

    EIDR Connect takes the data extracted by GRITS and structures it to reconstruct disease events as they are reported across different documents.

    CoffeeScript

  6. EpiTator EpiTator Public

    EpiTator annotates epidemiological information in text documents. It is the natural language processing framework that powers GRITS and EIDR Connect.

    Python 41 9

Repositories

Showing 10 of 201 repositories
  • hotspots2 Public

    This code powers the models for the paper "Global hotspots and correlates of emerging zoonotic diseases".

    ecohealthalliance/hotspots2’s past year of commit activity
    R 5 Apache-2.0 3 0 0 Updated Jun 28, 2024
  • open-rvfcast Public

    Wellcome Open RVFCast project repository

    ecohealthalliance/open-rvfcast’s past year of commit activity
    HTML 0 0 20 2 Updated Jun 27, 2024
  • ehallm Public

    What the Package Does (Title Case)

    ecohealthalliance/ehallm’s past year of commit activity
    R 0 0 1 0 Updated Jun 26, 2024
  • eha-ma-handbook Public

    EcoHealth Alliance Modeling & Analytics Handbook

    ecohealthalliance/eha-ma-handbook’s past year of commit activity
    R 4 7 46 0 Updated Jun 19, 2024
  • ohcleandat Public

    One Health Data Cleaning and Quality Checking Package

    ecohealthalliance/ohcleandat’s past year of commit activity
    R 0 MIT 0 5 0 Updated Jun 18, 2024
  • sabrenetfunctions Public

    Package for some functions for sabrenet data download, cleaning, summarizing, etc used across sabrenet repositories

    ecohealthalliance/sabrenetfunctions’s past year of commit activity
    R 0 0 0 0 Updated Jun 17, 2024
  • slurm-containerized-hpc-environment Public

    The goal of this project is to outline the strategies for integrating Simple Linux Utility for Resource Management(SLURM) into our existing High-Performance Computing(HPC) platform.

    ecohealthalliance/slurm-containerized-hpc-environment’s past year of commit activity
    Shell 0 0 2 0 Updated May 29, 2024
  • ecohealthalliance.r-universe.dev Public

    An R-Universe for EcoHealth Alliance Packages

    ecohealthalliance/ecohealthalliance.r-universe.dev’s past year of commit activity
    1 MIT 0 0 0 Updated Apr 17, 2024
  • slurm-eh-server Public
    ecohealthalliance/slurm-eh-server’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 16, 2024
  • pubcrawler Public

    PubCrawler uses the EpiTator framework (known at time of writing as Annie) to resolve toponyms in the PubMed Central Open Access Subset. It was used to create the estimate of reporting bias in the paper "Global hotspots and correlates of emerging zoonotic diseases".

    ecohealthalliance/pubcrawler’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 3 0 2 Updated Apr 8, 2024
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