Awesome Regulatory Genomics

A curated list of regulatory genomics papers and resources. 🎉

Inspired by Deep-Learning-Papers-Reading-Roadmap.

1 Basics

1.0 Books

[0] Watson, Baker, Bell, Gann, Levine, Losick. Molecular Biology of the Gene. 2013. 2007. 2003. 1987. 1976. 1970. 1965. [Amazon] [Pearson] [Douban]

2 Consortium-based Projects

2.1 The Encyclopedia of DNA Elements (ENCODE) Project

ENCODE Portal. [link]

ENCODE | Nature Collection, 05 September 2012. [link]

[1] The ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57–74 (2012). [pdf]

[2] Gerstein, M. et al. Architecture of the human regulatory network derived from ENCODE data. Nature 489, 91–100 (2012). [pdf]

2.2 The NIH Roadmap Epigenomics Project

Roadmap Epigenomics Project Portal. [link]

WashU Epigenome Browser. [link]

NIH Roadmap Epigenomics - GEO - NCBI. [link]

Epigenome Roadmap | Nature Collection, 18 February 2015. [link]

[3] Roadmap Epigenomics Consortium. et al. Integrative analysis of 111 reference human epigenomes. Nature 518, 317–330 (2015). [pdf]