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jhyuklee committed Apr 5, 2019
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This repository provides fine-tuning codes of BioBERT, a language representation model for biomedical domain, especially designed for biomedical text mining tasks such as biomedical named entity recognition, relation extraction, question answering, etc. Please refer to our paper [BioBERT: a pre-trained biomedical language representation model for biomedical text mining](http://arxiv.org/abs/1901.08746) for more details.

## Updates
* **(5 Apr 2019)** A new version of BioBERT (v1.1) will be available, soon. Please specify the version of BioBERT (currently [v1.0](https://github.com/naver/biobert-pretrained/releases) is only available) when using BioBERT.
* **(3 Feb 2019)** Updated our [arxiv paper](http://arxiv.org/abs/1901.08746).

## Installation
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where the second, third and fourth numbers will be SAcc, LAcc and MRR of factoid questions respectively.
Note that we pre-trained our model on SQuAD dataset to get the state-of-the-art performance. Please check our paper for details.

## FAQ
* [How can I use BioBERT with PyTorch?](https://github.com/dmis-lab/biobert/issues/2)
* [Can I get word/sentence embeddings using BioBERT?](https://github.com/dmis-lab/biobert/issues/23)
* [How can I pre-train QA models on SQuAD?](https://github.com/dmis-lab/biobert/issues/10)
* [What vocabulary does BioBERT use?](https://github.com/naver/biobert-pretrained/issues/1)

## License and Disclaimer
Please see LICENSE file for details. Downloading data indicates your acceptance of our disclaimer.

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