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@ding-lab

Li Ding's Lab

Li Ding's Lab at the Washington University School of Medicine

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  1. msisensor msisensor Public archive

    microsatellite instability detection using tumor only or paired tumor-normal data

    C++ 124 55

  2. CharGer CharGer Public

    Characterization of Germline variants

    Python 96 37

  3. MuSiC2 MuSiC2 Public

    identifying mutational significance in cancer genomes

    Perl 59 20

  4. hotspot3d hotspot3d Public

    3D hotspot mutation proximity analysis tool

    Perl 45 26

  5. PanCanAtlasGermline PanCanAtlasGermline Public

    R 42 14

  6. GenomeVIP GenomeVIP Public

    PHP 20 5

Repositories

Showing 10 of 134 repositories
  • somaticwrapper Public

    Detect somatic variants from tumor and normal WGS/WXS data

    ding-lab/somaticwrapper’s past year of commit activity
    Perl 15 AGPL-3.0 5 0 0 Updated Aug 19, 2024
  • ST_subclone_publication Public

    Code for spatial subclone paper

    ding-lab/ST_subclone_publication’s past year of commit activity
    R 0 1 0 0 Updated Aug 17, 2024
  • mushroom Public

    A computational tool for identification of 3D multi-modal spatial neighborhoods

    ding-lab/mushroom’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 10, 2024
  • SomaticSV Public

    CWL wrapper for Manta 1.4.0 and simple filter

    ding-lab/SomaticSV’s past year of commit activity
    Shell 3 GPL-3.0 1 0 0 Updated Aug 6, 2024
  • PanCan_snATAC_publication Public
    ding-lab/PanCan_snATAC_publication’s past year of commit activity
    Jupyter Notebook 13 4 2 0 Updated Aug 4, 2024
  • druggability Public
    ding-lab/druggability’s past year of commit activity
    Python 0 0 0 0 Updated Jun 4, 2024
  • CPTAC_PanCan_Signature_analysis Public
    ding-lab/CPTAC_PanCan_Signature_analysis’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 17, 2024
  • importGDC Public

    Automated download of CPTAC3 data from GDC

    ding-lab/importGDC’s past year of commit activity
    Shell 2 0 0 0 Updated May 16, 2024
  • Intratumor_heterogeneity Public
    ding-lab/Intratumor_heterogeneity’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 15, 2024
  • Immune_snATAC Public
    ding-lab/Immune_snATAC’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 15, 2024
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