bump version to 1.0.0

.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.9.0
+current_version = 1.0.0
 
 [comment]
 comment = The contents of this file cannot be merged with that of setup.cfg until https://github.com/c4urself/bump2version/issues/185 is resolved

CITATION.cff

@@ -45,7 +45,7 @@ authors:
     orcid: "https://orcid.org/0000-0002-5413-9038"
 
 doi: 10.5281/zenodo.5801485
-version: "0.9.0"
+version: "1.0.0"
 repository-code: "https://github.com/dianna-ai/dianna"
 keywords:
   - XAI

dianna/__init__.py

@@ -26,12 +26,13 @@
 
 logging.getLogger(__name__).addHandler(logging.NullHandler())
 
-__author__ = "DIANNA Team"
-__email__ = "dianna-ai@esciencecenter.nl"
-__version__ = "0.9.0"
+__author__ = 'DIANNA Team'
+__email__ = 'dianna-ai@esciencecenter.nl'
+__version__ = '1.0.0'
 
 
-def explain_timeseries(model_or_function, timeseries_data, method, labels, **kwargs):
+def explain_timeseries(model_or_function, timeseries_data, method, labels,
+                       **kwargs):
     """Explain timeseries data given a model and a chosen method.
 
     Args:
@@ -46,11 +47,10 @@ def explain_timeseries(model_or_function, timeseries_data, method, labels, **kwa
         One heatmap per class.
 
     """
-    explainer = _get_explainer(method, kwargs, modality="Timeseries")
-    explain_timeseries_kwargs = utils.get_kwargs_applicable_to_function(explainer.explain, kwargs)
-    return explainer.explain(model_or_function,
-                             timeseries_data,
-                             labels,
+    explainer = _get_explainer(method, kwargs, modality='Timeseries')
+    explain_timeseries_kwargs = utils.get_kwargs_applicable_to_function(
+        explainer.explain, kwargs)
+    return explainer.explain(model_or_function, timeseries_data, labels,
                              **explain_timeseries_kwargs)
 
 
@@ -69,15 +69,18 @@ def explain_image(model_or_function, input_data, method, labels, **kwargs):
         One heatmap (2D array) per class.
 
     """
-    if method.upper() == "KERNELSHAP":
+    if method.upper() == 'KERNELSHAP':
         # To avoid Access Violation on Windows with SHAP:
         from onnx_tf.backend import prepare  # noqa: F401
-    explainer = _get_explainer(method, kwargs, modality="Image")
-    explain_image_kwargs = utils.get_kwargs_applicable_to_function(explainer.explain, kwargs)
-    return explainer.explain(model_or_function, input_data, labels, **explain_image_kwargs)
+    explainer = _get_explainer(method, kwargs, modality='Image')
+    explain_image_kwargs = utils.get_kwargs_applicable_to_function(
+        explainer.explain, kwargs)
+    return explainer.explain(model_or_function, input_data, labels,
+                             **explain_image_kwargs)
 
 
-def explain_text(model_or_function, input_text, tokenizer, method, labels, **kwargs):
+def explain_text(model_or_function, input_text, tokenizer, method, labels,
+                 **kwargs):
     """Explain text (input_text) given a model and a chosen method.
 
     Args:
@@ -93,24 +96,28 @@ def explain_text(model_or_function, input_text, tokenizer, method, labels, **kwa
         List of (word, index of word in raw text, importance for target class) tuples.
 
     """
-    explainer = _get_explainer(method, kwargs, modality="Text")
-    explain_text_kwargs = utils.get_kwargs_applicable_to_function(explainer.explain, kwargs)
-    return explainer.explain(
-        model_or_function=model_or_function,
-        input_text=input_text,
-        labels=labels,
-        tokenizer=tokenizer,
-        **explain_text_kwargs)
+    explainer = _get_explainer(method, kwargs, modality='Text')
+    explain_text_kwargs = utils.get_kwargs_applicable_to_function(
+        explainer.explain, kwargs)
+    return explainer.explain(model_or_function=model_or_function,
+                             input_text=input_text,
+                             labels=labels,
+                             tokenizer=tokenizer,
+                             **explain_text_kwargs)
 
 
 def _get_explainer(method, kwargs, modality):
     try:
-        method_submodule = importlib.import_module(f'dianna.methods.{method.lower()}')
+        method_submodule = importlib.import_module(
+            f'dianna.methods.{method.lower()}')
     except ImportError as err:
-        raise ValueError(f"Method {method} does not exist") from err
+        raise ValueError(f'Method {method} does not exist') from err
     try:
-        method_class = getattr(method_submodule, f"{method.upper()}{modality}")
+        method_class = getattr(method_submodule, f'{method.upper()}{modality}')
     except AttributeError as err:
-        raise ValueError(f"Data modality {modality} is not available for method {method.upper()}") from err
-    method_kwargs = utils.get_kwargs_applicable_to_function(method_class.__init__, kwargs)
+        raise ValueError(
+            f'Data modality {modality} is not available for method {method.upper()}'
+        ) from err
+    method_kwargs = utils.get_kwargs_applicable_to_function(
+        method_class.__init__, kwargs)
     return method_class(**method_kwargs)

docs/conf.py

@@ -17,16 +17,16 @@
 
 # -- Project information -----------------------------------------------------
 
-project = u"dianna"
-copyright = u"2022, Netherlands eScience Center"
-author = u"DIANNA Team"
+project = u'dianna'
+copyright = u'2022, Netherlands eScience Center'
+author = u'DIANNA Team'
 
 # The version info for the project you're documenting, acts as replacement for
 # |version| and |release|, also used in various other places throughout the
 # built documents.
 #
 # The short X.Y version.
-version = "0.9.0"
+version = '1.0.0'
 # The full version, including alpha/beta/rc tags.
 release = version
 
@@ -36,27 +36,19 @@
 # extensions coming with Sphinx (named "sphinx.ext.*") or your custom
 # ones.
 extensions = [
-    "sphinx.ext.autodoc",
-    "sphinx.ext.coverage",
-    "sphinx.ext.doctest",
-    "sphinx.ext.intersphinx",
-    "sphinx.ext.mathjax",
-    "sphinx.ext.napoleon",
-    "sphinx.ext.todo",
-    "sphinx.ext.viewcode",
-    "autoapi.extension",
-    "nbsphinx",
-    "nbsphinx_link",
-    "myst_parser"
+    'sphinx.ext.autodoc', 'sphinx.ext.coverage', 'sphinx.ext.doctest',
+    'sphinx.ext.intersphinx', 'sphinx.ext.mathjax', 'sphinx.ext.napoleon',
+    'sphinx.ext.todo', 'sphinx.ext.viewcode', 'autoapi.extension', 'nbsphinx',
+    'nbsphinx_link', 'myst_parser'
 ]
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ["_templates"]
+templates_path = ['_templates']
 
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
+exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
 
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = False
@@ -70,7 +62,7 @@
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = "sphinx_rtd_theme"
+html_theme = 'sphinx_rtd_theme'
 
 # Theme options are theme-specific and customize the look and feel of a theme
 # further.  For a list of options available for each theme, see the
@@ -80,11 +72,12 @@
 
 # -- Options for Intersphinx
 
-intersphinx_mapping = {'python': ('https://docs.python.org/3', None),
-                       # Commonly used libraries, uncomment when used in package
-                       # 'numpy': ('http://docs.scipy.org/doc/numpy/', None),
-                       # 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None),
-                       # 'scikit-learn': ('https://scikit-learn.org/stable/', None),
-                       # 'matplotlib': ('https://matplotlib.org/stable/', None),
-                       # 'pandas': ('http://pandas.pydata.org/docs/', None),
-                       }
+intersphinx_mapping = {
+    'python': ('https://docs.python.org/3', None),
+    # Commonly used libraries, uncomment when used in package
+    # 'numpy': ('http://docs.scipy.org/doc/numpy/', None),
+    # 'scipy': ('http://docs.scipy.org/doc/scipy/reference/', None),
+    # 'scikit-learn': ('https://scikit-learn.org/stable/', None),
+    # 'matplotlib': ('https://matplotlib.org/stable/', None),
+    # 'pandas': ('http://pandas.pydata.org/docs/', None),
+}

setup.cfg

@@ -25,7 +25,7 @@ name = dianna
 project_urls =
     Bug Tracker = https://github.com/dianna-ai/dianna/issues
 url = https://github.com/dianna-ai/dianna
-version = 0.9.0
+version = 1.0.0
 license = Apache License 2.0
 
 [options]