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@dhslab

Code and Software from David Spencer's lab

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  1. nf-core-wgsnano nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    Nextflow 3 4

  2. nf-core-hic nf-core-hic Public

    Pipeline for Hi-C data analysis

    Nextflow 2 1

  3. dhslab-docker-images dhslab-docker-images Public

    Docker images for the Spencer lab

    Dockerfile 1 1

  4. tagbam tagbam Public

    C program to add a tag to reads in a bam file from amplicon sequencing with an ID for each amplicon.

    C

  5. dhslab-website dhslab-website Public

    Forked from mpa139/allanlab

    David Spencer Lab website

    SCSS

  6. wdlworkflows wdlworkflows Public

    Spencer lab WDL workflows for genomic analysis

    WDL 1

Repositories

Showing 10 of 17 repositories
  • nf-core-scge Public

    Nextflow implementation of scge workflow

    dhslab/nf-core-scge’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Sep 5, 2024
  • nf-core-wgsnano Public

    Nextflow pipeline for analysis of Nanopore Whole Genome Sequencing

    dhslab/nf-core-wgsnano’s past year of commit activity
    Nextflow 3 MIT 4 0 0 Updated Aug 30, 2024
  • cutandrun Public Forked from nf-core/cutandrun

    Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

    dhslab/cutandrun’s past year of commit activity
    Nextflow 0 MIT 46 0 0 Updated Aug 23, 2024
  • dhslab-docker-images Public

    Docker images for the Spencer lab

    dhslab/dhslab-docker-images’s past year of commit activity
    Dockerfile 1 MIT 1 1 0 Updated Aug 21, 2024
  • cle-soma Public

    CLE SOMA workflow

    dhslab/cle-soma’s past year of commit activity
    WDL 0 2 0 0 Updated Aug 12, 2024
  • dhsrmethtools Public

    R functions for methylation analysis

    dhslab/dhsrmethtools’s past year of commit activity
    R 0 0 0 0 Updated Jul 15, 2024
  • dhslab-website Public Forked from mpa139/allanlab

    David Spencer Lab website

    dhslab/dhslab-website’s past year of commit activity
    SCSS 0 1,144 0 0 Updated May 29, 2024
  • dragenflow Public
    dhslab/dragenflow’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated May 26, 2024
  • cle-myeloseqhd Public Forked from genome/cle-myeloseqhd
    dhslab/cle-myeloseqhd’s past year of commit activity
    Python 0 4 0 0 Updated Oct 12, 2023
  • nf-core-hic Public

    Pipeline for Hi-C data analysis

    dhslab/nf-core-hic’s past year of commit activity
    Nextflow 2 MIT 1 1 0 Updated Sep 1, 2023
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