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updated readme
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tobiasrausch committed Aug 3, 2022
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Expand Up @@ -57,6 +57,18 @@ You can also specify an output file in [BCF](http://samtools.github.io/bcftools/
`bcftools view delly.bcf > delly.vcf`


Example
-------

A small example is included for short-read, long-read and copy-number variant calling.

`delly call -g example/ref.fa example/sr.bam > sr.vcf`

`delly lr -g example/ref.fa example/lr.bam > lr.vcf`

`delly cnv -g example/ref.fa -m example/map.fa.gz example/sr.bam > cnv.vcf`


Somatic SV calling
------------------

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