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Replace setup.py with pyproject.toml #1187

Merged
merged 36 commits into from
Sep 19, 2024
Merged

Replace setup.py with pyproject.toml #1187

merged 36 commits into from
Sep 19, 2024

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ethho
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@ethho ethho commented Sep 18, 2024 •
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Refactors build to use modern setuptools standards such as pyproject.toml instead of setup.py. Includes many changes to Docker build and CI as well.

@ethho
Merge branch 'master' into migrate-pyproject
677a8b5
@ethho
Remove unnecessary files for build
2d083bb
@ethho
Basic pyproject.toml from poetry init
65fb4d4
@ethho
Basic pyproject.toml from python.org
0c297ff 
https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#a-full-example
@ethho
First pass pyproject.toml
77cf1c6
@ethho
rm setup.py
65446a7
@ethho
Clean up Docker compose
bbf3957
@ethho
Move LNX-*.yml to docker-compose.yaml
f1b065e 
Standard file name
@ethho
Minimal Dockerfile
7663e67
@ethho
Deprecate datajoint.plugin and otumat
f8b02dd
@ethho
docker compose runs pytests
4cdfe4f
@ethho
Revert to using datajoint.plugin
b08150a
@ethho
Revert to using otumat and datajoint.pub
04b9048
@ethho
Many changes to CI/CD
7768497
@ethho
Separate djtest service
e6d034d
@ethho
Deprecate fakeservices.datajoint.io in testing
b8efb1d
@ethho
Install graphviz and pydot via conda in container
b53f688
@ethho
Install git in conda env
394b19f
@ethho
Fix or skip failing tests
7b269ca
@ethho
Use build instead of setup.py in CI
5fd8371
@ethho
Remove duplicate syntax tests from CI
eefcbd8
@ethho
Fix perms in container install and volumes
91693eb
@ethho
Quiet docker pull in CI
e3d84ef
@ethho
Format with black==24.8.0
d3b7592
@ethho
Set user in docker-compose
764ae93
@ethho
Try mambaorg/micromamba base image
26050ca
@ethho
Use micromamba run instead of activate during build
850ae19
@ethho
Skip minio client fixture teardown by default
426f62d
@ethho
yield minio client properly
0812fe1
@ethho
Use datajoint/_version.py written by setuptools_scm
fc5a27f
@ethho ethho marked this pull request as ready for review September 19, 2024 18:43
@ethho ethho merged commit c831797 into docker-img-refactor Sep 19, 2024
21 checks passed
@ethho ethho deleted the migrate-pyproject branch September 19, 2024 18:55
@ethho ethho restored the migrate-pyproject branch September 19, 2024 18:55
@ethho ethho mentioned this pull request Sep 20, 2024
Merged
@ethho ethho deleted the migrate-pyproject branch September 23, 2024 14:49
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@ethho