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Script for generating S3 versioned file stats #473

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184 changes: 184 additions & 0 deletions tools/s3-gc-stats
Original file line number Diff line number Diff line change
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#!/usr/bin/env python3

# Assumptions made by this code:
# - list_object_versions sorts all versions (including delete markers) by key
# (in ascending order) and last modified date (in descending order, sometimes
# with consecutive equal timestamps) and returns them in chunks of 1000 (by
# default), with each chunk divided into proper versions and delete markers.
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# - Objects that have been deleted will have a delete marker as their latest
# version and at least one proper version dated before that.

__requires__ = ["boto3", "click >= 7.0", "humanize"]

from bisect import bisect
from datetime import datetime
import re
import sys
from typing import List, NamedTuple, Tuple
from urllib.parse import urlparse

import boto3
from botocore import UNSIGNED
from botocore.client import Config
import click
from humanize import naturalsize


class Version(NamedTuple):
bucket: str
key: str
version_id: str
size: int
last_modified: datetime

@classmethod
def from_data(cls, bucket, data):
return cls(
bucket=bucket,
key=data["Key"],
version_id=data["VersionId"],
size=data["Size"],
last_modified=data["LastModified"],
)

@property
def key_url(self):
return f"s3://{self.bucket}/{self.key}"

@property
def url(self):
return f"s3://{self.bucket}/{self.key}?versionId={self.version_id}"

def __str__(self):
return f"{self.url} {self.size}"


class BucketStats:
def __init__(self, bucket, prefix, list_files=False, stat=("all",), exclude=()):
self.bucket: str = bucket
self.prefix: str = prefix
self.list_files: bool = list_files
self.stat: Tuple[str, ...] = stat
self.exclude: Tuple[str, ...] = exclude
#: Versions of the current key
self.versions: List[Version] = []
# Deleted keys, in ascending order:
self.deleted: List[str] = []
self.qtys = {
"all": 0,
"visible": 0,
"invisible": 0,
"old": 0,
}
self.sizes = {
"all": 0,
"visible": 0,
"invisible": 0,
"old": 0,
}
self.found_any = False

def run(self):
# Use s3 anonymously/without credentials:
client = boto3.client("s3", config=Config(signature_version=UNSIGNED))
for page in client.get_paginator("list_object_versions").paginate(
Bucket=self.bucket, Prefix=self.prefix
):
# TODO: Filter out keys that ends with slashes?
for dm in page.get("DeleteMarkers", []):
if dm["IsLatest"]:
self.mark_deleted(dm["Key"])
for v in page["Versions"]:
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note: it seems to correctly work out the keys which were added before versioning was turned on -- look at 1version-nonversioned1.txt and 2versions-nonversioned1.txt . GREAT!
(git)lena:~/proj/dandi/dandi-cli-master[gh-470]git
$> tools/s3-gc-stats --stat visible --list s3://datalad-test0-versioned
s3://datalad-test0-versioned/1version-nonversioned1.txt?versionId=null 8
s3://datalad-test0-versioned/1version-removed-recreated.txt?versionId=vurmCZo5d3.iAzTV.YAfTcMr.LDVjQIK 8
s3://datalad-test0-versioned/2versions-nonversioned1.txt?versionId=V4Dqhu0QTEtxmvoNkCHGrjVZVomR1Ryo 8
s3://datalad-test0-versioned/2versions-nonversioned1.txt_sameprefix?versionId=QUOLbSrBHBmU3UNeEvdfcX2puqRffH9l 8
s3://datalad-test0-versioned/2versions-removed-recreated.txt?versionId=bBVSCB4MdBOeEXDQ2KwrjtrevpwFabaY 8
s3://datalad-test0-versioned/2versions-removed-recreated.txt_sameprefix?versionId=cfTdf3N8exZLFg.KcW5szQKrFNLUyCu1 8
s3://datalad-test0-versioned/3versions-allversioned.txt?versionId=Kvuind11HZh._dCPaDAb0OY9dRrQoTMn 8
s3://datalad-test0-versioned/3versions-allversioned.txt_sameprefix?versionId=Mvsc4FgJWc6gExwSw1d6wsLrnk6wdDVa 8
Visible files: 8 / Size: 64 (64 Bytes)
1 66166.....................................:Wed 17 Mar 2021 10:34:34 AM EDT:.
(git)lena:~/proj/dandi/dandi-cli-master[gh-470]git
$> tools/s3-gc-stats --stat invisible --list s3://datalad-test0-versioned
s3://datalad-test0-versioned/1version-removed-recreated.txt?versionId=B7cP2PKGRNeRZ7EktWN82UnUaGjb9dh_ 8
s3://datalad-test0-versioned/1version-removed.txt?versionId=eZ5Hgwo8azfBv3QT7aW9dmm2sbLUY.QP 8
s3://datalad-test0-versioned/2versions-nonversioned1.txt?versionId=null 8
s3://datalad-test0-versioned/2versions-removed-recreated.txt?versionId=zwW0b567gYO3puJeLMZsOmETqowJnv6l 8
s3://datalad-test0-versioned/3versions-allversioned.txt?versionId=b.qCuh7Sg58VIYj8TVHzbRS97EvejzEl 8
s3://datalad-test0-versioned/3versions-allversioned.txt?versionId=pNsV5jJrnGATkmNrP8.i_xNH6CY4Mo5s 8
Invisible files: 6 / Size: 48 (48 Bytes)

self.add_version(v)
self.end_key()
for rtype in self.stat:
print(
f"{rtype.title()} files: {self.qtys[rtype]}",
"/",
f"Size: {self.sizes[rtype]} ({naturalsize(self.sizes[rtype])})",
)

def add_version(self, data):
v = Version.from_data(self.bucket, data)
if self.versions:
if self.versions[-1].key == v.key:
assert (
self.versions[-1].last_modified >= v.last_modified
), f"Versions for key {v.key!r} not in reverse chronological order"
else:
assert self.versions[-1].key < v.key, (
"Keys not in lexicographic order;"
f" {self.versions[-1].key!r} listed before {v.key!r}"
)
self.end_key()
self.versions.append(v)

def mark_deleted(self, key):
if self.deleted:
assert (
self.deleted[-1] < key
), f"DeleteMarkers not in lexicographic order; {self.deleted[-1]} listed before {key}"
self.deleted.append(key)

def end_key(self):
if self.versions:
key = self.versions[0].key
if self.deleted:
i = bisect(self.deleted, key)
# Error/warn if i>1?
deleted = i > 0 and self.deleted[i - 1] == key
del self.deleted[:i]
else:
deleted = False
if deleted:
self.report({"all", "invisible"}, self.versions)
else:
self.report({"all", "visible"}, self.versions[:1])
self.report({"all", "old", "invisible"}, self.versions[1:])
self.versions = []

def report(self, rtypes, versions):
if not versions:
return
if any(re.search(rgx, versions[0].key_url) for rgx in self.exclude):
return
if rtypes.intersection(self.stat):
for v in versions:
self.found_any = True
if self.list_files:
print(v)
for t in rtypes:
self.qtys[t] += 1
self.sizes[t] += v.size


@click.command()
@click.option("--exclude", metavar="URLREGEX", multiple=True)
@click.option("--fail-if-any", is_flag=True)
@click.option("--list", "list_files", is_flag=True)
@click.option(
"--stat",
type=click.Choice(["all", "visible", "invisible", "old"]),
multiple=True,
default=["all"],
)
@click.argument("url")
def main(stat, list_files, fail_if_any, url, exclude):
bucket, prefix = parse_s3_url(url)
stats = BucketStats(
bucket, prefix, list_files=list_files, stat=stat, exclude=exclude
)
stats.run()
if fail_if_any and stats.found_any:
sys.exit(1)


def parse_s3_url(url):
parts = urlparse(url, allow_fragments=False)
if parts.scheme != "s3":
raise ValueError(f"not an S3 URL: {url}")
return (parts.netloc, parts.path.lstrip("/"))


if __name__ == "__main__":
main()