Skip to content

Commit

Permalink
Merge remote-tracking branch 'upstream/enh/subject' into enh/subject
Browse files Browse the repository at this point in the history 
* upstream/enh/subject:
  Break long lines
  • Loading branch information
@satra
satra committed Dec 18, 2020
2 parents ec9414f + 5e15370 commit eb5a7cd
Showing 1 changed file with 112 additions and 21 deletions.
133 changes: 112 additions & 21 deletions dandi/tests/test_metadata.py
View file
Original file line number Diff line number Diff line change
Expand Up @@ -589,7 +589,10 @@ def test_dandimeta_migration():
relatedResource=[
Resource(
identifier="DOI:10.17605/OSF.IO/HV7JA",
name="A NWB-based Dataset and Processing Pipeline of Human Single-Neuron Activity During a Declarative Memory Task",
name=(
"A NWB-based Dataset and Processing Pipeline of Human"
" Single-Neuron Activity During a Declarative Memory Task"
),
repository="Open Science Framework",
url="https://osf.io/hv7ja/",
relation=RelationType.IsDerivedFrom,
Expand Down Expand Up @@ -635,7 +638,10 @@ def test_dandimeta_migration():
name="Chandravadia, Nand",
affiliation=[
Organization(
name="Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurosurgery, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -670,7 +676,13 @@ def test_dandimeta_migration():
name="Liang, Dehua",
affiliation=[
Organization(
name="Institute for Interdisciplinary Brain and Behavioral Sciences, Crean College of Health and Behavioral Sciences, Schmid College of Science and Technology, Chapman University, Orange, CA, USA",
name=(
"Institute for Interdisciplinary Brain and"
" Behavioral Sciences, Crean College of Health and"
" Behavioral Sciences, Schmid College of Science"
" and Technology, Chapman University, Orange, CA,"
" USA"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -738,7 +750,10 @@ def test_dandimeta_migration():
name="Carlson, April",
affiliation=[
Organization(
name="Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurosurgery, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -763,7 +778,10 @@ def test_dandimeta_migration():
name="Faraut, Mailys",
affiliation=[
Organization(
name="Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurosurgery, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -784,7 +802,10 @@ def test_dandimeta_migration():
name="Chung, Jeffrey M.",
affiliation=[
Organization(
name="Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurology, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -805,7 +826,10 @@ def test_dandimeta_migration():
name="Reed, Chrystal M.",
affiliation=[
Organization(
name="Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurology, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -831,7 +855,11 @@ def test_dandimeta_migration():
name="Dichter, Ben",
affiliation=[
Organization(
name="Biological Systems & Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA",
name=(
"Biological Systems & Engineering Division,"
" Lawrence Berkeley National Laboratory, Berkeley,"
" CA, USA"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -867,7 +895,13 @@ def test_dandimeta_migration():
name="Maoz, Uri",
affiliation=[
Organization(
name="Institute for Interdisciplinary Brain and Behavioral Sciences, Crean College of Health and Behavioral Sciences, Schmid College of Science and Technology, Chapman University, Orange, CA, USA",
name=(
"Institute for Interdisciplinary Brain and"
" Behavioral Sciences, Crean College of Health and"
" Behavioral Sciences, Schmid College of Science"
" and Technology, Chapman University, Orange, CA,"
" USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -877,7 +911,11 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA",
name=(
"Division of Biology and Biological Engineering,"
" California Institute of Technology, Pasadena, CA,"
" USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -898,7 +936,10 @@ def test_dandimeta_migration():
name="Kalia, Suneil K.",
affiliation=[
Organization(
name="Division of Neurosurgery, Department of Surgery, University of Toronto, Toronto, Canada",
name=(
"Division of Neurosurgery, Department of Surgery,"
" University of Toronto, Toronto, Canada"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -939,7 +980,10 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Division of Neurosurgery, Department of Surgery, University of Toronto, Toronto, Canada",
name=(
"Division of Neurosurgery, Department of Surgery,"
" University of Toronto, Toronto, Canada"
),
identifier=None,
email=None,
url=None,
Expand All @@ -960,7 +1004,10 @@ def test_dandimeta_migration():
name="Mamelak, Adam N.",
affiliation=[
Organization(
name="Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurosurgery, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -999,7 +1046,10 @@ def test_dandimeta_migration():
name="Rutishauser, Ueli",
affiliation=[
Organization(
name="Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurosurgery, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -1009,7 +1059,10 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Department of Neurology, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -1019,7 +1072,11 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA",
name=(
"Division of Biology and Biological Engineering,"
" California Institute of Technology, Pasadena, CA,"
" USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -1029,7 +1086,11 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Computational and Neural Systems Program, California Institute of Technology, Pasadena, CA, USA",
name=(
"Computational and Neural Systems Program,"
" California Institute of Technology, Pasadena, CA,"
" USA"
),
identifier=None,
email=None,
url=None,
Expand All @@ -1039,7 +1100,11 @@ def test_dandimeta_migration():
contactPoint=None,
),
Organization(
name="Center for Neural Science and Medicine, Department of Biomedical Science, Cedars-Sinai Medical Center, Los Angeles, CA, USA",
name=(
"Center for Neural Science and Medicine, Department"
" of Biomedical Science, Cedars-Sinai Medical"
" Center, Los Angeles, CA, USA"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -1094,7 +1159,10 @@ def test_dandimeta_migration():
affiliation=None,
),
Person(
name="Foundation, NARSAD Young Investigator grant from the Brain & Behavior Research",
name=(
"Foundation, NARSAD Young Investigator grant from the Brain"
" & Behavior Research"
),
identifier=None,
email=None,
url=None,
Expand Down Expand Up @@ -1124,7 +1192,27 @@ def test_dandimeta_migration():
contactPoint=None,
),
],
description="A challenge for data sharing in systems neuroscience is the multitude of different data formats used. Neurodata Without Borders: Neurophysiology 2.0 (NWB:N) has emerged as a standardized data format for the storage of cellular-level data together with meta-data, stimulus information, and behavior. A key next step to facilitate NWB:N adoption is to provide easy to use processing pipelines to import/export data from/to NWB:N. Here, we present a NWB-formatted dataset of 1863 single neurons recorded from the medial temporal lobes of 59 human subjects undergoing intracranial monitoring while they performed a recognition memory task. We provide code to analyze and export/import stimuli, behavior, and electrophysiological recordings to/from NWB in both MATLAB and Python. The data files are NWB:N compliant, which affords interoperability between programming languages and operating systems. This combined data and code release is a case study for how to utilize NWB:N for human single-neuron recordings and enables easy re-use of this hard-to-obtain data for both teaching and research on the mechanisms of human memory.",
description=(
"A challenge for data sharing in systems neuroscience is the"
" multitude of different data formats used. Neurodata Without"
" Borders: Neurophysiology 2.0 (NWB:N) has emerged as a"
" standardized data format for the storage of cellular-level data"
" together with meta-data, stimulus information, and behavior. A"
" key next step to facilitate NWB:N adoption is to provide easy to"
" use processing pipelines to import/export data from/to NWB:N."
" Here, we present a NWB-formatted dataset of 1863 single neurons"
" recorded from the medial temporal lobes of 59 human subjects"
" undergoing intracranial monitoring while they performed a"
" recognition memory task. We provide code to analyze and"
" export/import stimuli, behavior, and electrophysiological"
" recordings to/from NWB in both MATLAB and Python. The data files"
" are NWB:N compliant, which affords interoperability between"
" programming languages and operating systems. This combined data"
" and code release is a case study for how to utilize NWB:N for"
" human single-neuron recordings and enables easy re-use of this"
" hard-to-obtain data for both teaching and research on the"
" mechanisms of human memory."
),
identifier=PropertyValue(
maxValue=None,
minValue=None,
Expand All @@ -1146,7 +1234,10 @@ def test_dandimeta_migration():
"single-neurons",
],
license="CC-BY-4.0",
name="A NWB-based dataset and processing pipeline of human single-neuron activity during a declarative memory task",
name=(
"A NWB-based dataset and processing pipeline of human single-neuron"
" activity during a declarative memory task"
),
schemaVersion="1.0.0-rc1",
studyTarget=None,
protocol=None,
Expand Down

0 comments on commit eb5a7cd

Please sign in to comment.