Renseq Pacbio pipeline
Apologies for the size of this image, but it installs the entire PACBio SMRT-Analysis suite which is quite big. And apparently, to run the CLI smrtpipe.py, the whole suite must be installed, including a mysqldb and a full web stack for a web GUI that is never used. Anyway, most of the bulk seem to be folders mysteriously named "parameters" with a date. Gigs worth of parameters, why not?
put your files in a folder that will be mounted in the image as a volume e.g. data. Then:
docker run -ti -v data:/home/admin/data cyverseuk/renseq /home/admin/data/adapter.fasta /home/admin/data/file1.h5 /home/admin/data/file2.h5 etc...