Skip to content
@compomics

Computational Omics and Systems Biology Group

The CompOmics group, headed by Prof. Dr. Lennart Martens, specializes in the management, analysis and integration of high-throughput Omics data.

Pinned

  1. ThermoRawFileParser ThermoRawFileParser Public

    Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono

    C# 178 47

  2. DeepLC DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    Python 52 18

  3. ms2rescore ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    Python 40 14

  4. compomics-utilities compomics-utilities Public

    Open source Java library for computational proteomics

    Java 29 17

  5. peptide-shaker peptide-shaker Public

    Interpretation of proteomics identification results

    Java 47 19

  6. searchgui searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    Java 40 16

Repositories

Showing 10 of 92 repositories
  • DeepLC Public

    DeepLC: Retention time prediction for (modified) peptides using Deep Learning.

    compomics/DeepLC’s past year of commit activity
    Python 52 Apache-2.0 18 4 0 Updated Aug 25, 2024
  • ms2rescore-rs Public

    Rust functionality for the MS²Rescore package

    compomics/ms2rescore-rs’s past year of commit activity
    Rust 2 Apache-2.0 0 0 1 Updated Aug 23, 2024
  • ms2rescore Public

    Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

    compomics/ms2rescore’s past year of commit activity
    Python 40 Apache-2.0 14 12 5 Updated Aug 23, 2024
  • mumble Public

    Finding the perfect modification for your mass shift

    compomics/mumble’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Aug 19, 2024
  • IM2Deep Public

    Collisional cross-section prediction for modified peptides

    compomics/IM2Deep’s past year of commit activity
    Python 5 Apache-2.0 0 0 1 Updated Aug 19, 2024
  • searchgui Public

    Highly adaptable common interface for proteomics search and de novo engines

    compomics/searchgui’s past year of commit activity
    Java 40 16 13 (7 issues need help) 0 Updated Aug 16, 2024
  • compomics-utilities Public

    Open source Java library for computational proteomics

    compomics/compomics-utilities’s past year of commit activity
    Java 29 17 4 0 Updated Aug 15, 2024
  • psm_utils Public

    Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

    compomics/psm_utils’s past year of commit activity
    Python 23 Apache-2.0 6 9 (2 issues need help) 0 Updated Aug 14, 2024
  • ms2pip Public

    MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

    compomics/ms2pip’s past year of commit activity
    HTML 35 Apache-2.0 18 11 3 Updated Aug 8, 2024
  • ThermoRawFileParserGUI Public

    Graphical user interface for the ThermoRawFileParser

    compomics/ThermoRawFileParserGUI’s past year of commit activity
    Java 19 Apache-2.0 0 0 0 Updated Jul 5, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…